Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0255 ATGCAATCCTCATCGGAGTTTGAAGAGAAAAGTGAAGACCATGATGAAGATGATTCCAAACCTAACAACAAACAAACCAAGTTCTACGATGTTTATGGACCCCAAGGCCAGGCAGATGTTGTTTTCAAGTCACCAGAAGATAATTCAACTCTGAATCTTAACGACGTTCAAGGACTTGTGACTTGGGTGCTTGGTGAAGGATTTATGCCATCATGGGTTTTTATCAAGAATAAACCTCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGCCTGGATGCAGCTTTGTTCTTGTCGCAGTCTAAAAAGCTTCCCAATTTAAAAAAATTATGTCGCAAACCAAGGCCACTTCTAGCTCTTAGCCGTATATCAGATGGTATGCAGACAGTAGATGCACTTCTAACATGCAAGCTGAAACGAAAGAGGGATCAACATAGTTCAATTATACCGAAATCTACTCTGATATCTCAACAAGAAAAAAGCTGTAGTGATACAGATGGTGTATCATTTACGGAGCTTGTGAAAGACATACCATTTCCCGTTACATACTATACACTAACAGAGAAACAACTGGAAGAGAATGGATACTATGTTAATCAGCCAGGTTTTGTTTCTACTATGCCTGCTCCTCCGGGATCATTTTGTGAGATGTTGGCGCTTGATTGTGAGATGTGCATAACAAGCGAGGGTTTCGAACTGACAAGAGTTACTCTAGTGGATGTCCAAGGACAGGTTTTGATAGATAAATTGGTTAAACCATCAAATGCTATTACTGATTACAATACCAGATTTAGTGGAATAACGTCTGAGATGTTAGATGGGGTGACGACAAGTCTGAGAGATATTCAGGAAGAGTTTCTAAAGCTGGTTTACAAAGAGACTATCCTTGTTGGGCATTCTTTGGAAAATGACTTATTAGCGTTGAAGATATCTCATGATTTGGTCATTGACACAGCAGTATTATACAAACACCCACGAGGAGCATCTCATAAAACTGCTCTACGGGTTCTGACTAAGAGATTTCTTTCAAGGGAGATACAGCAATCAGAGAATGGACATGACAGCATTGAAGATGCTAAAGCTACCATGGAATTGGCACTATTGAAGATCCGGAATGGGCCTGACTTTGGTTCCCCTCCATCCTTTATGAAAAAAAAACTCCTTTCCATTTTGAGCAAGTCTGGCAAAACCTCCTCTTTGATTGACAATATATCTGTTGTAAAACGATATGCCTCTGAGTCGTCTCATTCAATTCCGGTGACCTCTGATGATGATGCACTTGCAAAGACCAGCAAAGAGGTGAAGAATGACAAGGTACATTTTATCTGGACTCAGTTTTCAGAGTTACAATCATACTTAAAGAAACAAGCTGAAGATTCAGAGATCTTGAATAAAAGACTCGCAGAGATGATGGCATTACTTACATGCCAGAAGGATTTGACAAAAGGTAAAGACTTCAAGTTGAGTGCATCTGCCGAACTGAAGCAAATTTTGGCTCACATGGATGCTAGAATTCATAAACTGTACATGGCATTGCCTACTAATGCCATGTTGATAATTTGCACTGGTCATGGAGACACAGCAGTTGTCGACAGGCTGAGAAGAATGCTTGCTGAGGAGAGTGAAAGTAACTTTTGTCGAGAACAGATTGTTGAAATCTTGGAAGAGCTTCAAGCTCGAGCTGAAGTAGCCTTATGTTTTGTAGGTGTAAAGCATTGA 1719 0.4014 MQSSSEFEEKSEDHDEDDSKPNNKQTKFYDVYGPQGQADVVFKSPEDNSTLNLNDVQGLVTWVLGEGFMPSWVFIKNKPLIPKVVMLYMPGLDAALFLSQSKKLPNLKKLCRKPRPLLALSRISDGMQTVDALLTCKLKRKRDQHSSIIPKSTLISQQEKSCSDTDGVSFTELVKDIPFPVTYYTLTEKQLEENGYYVNQPGFVSTMPAPPGSFCEMLALDCEMCITSEGFELTRVTLVDVQGQVLIDKLVKPSNAITDYNTRFSGITSEMLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGASHKTALRVLTKRFLSREIQQSENGHDSIEDAKATMELALLKIRNGPDFGSPPSFMKKKLLSILSKSGKTSSLIDNISVVKRYASESSHSIPVTSDDDALAKTSKEVKNDKVHFIWTQFSELQSYLKKQAEDSEILNKRLAEMMALLTCQKDLTKGKDFKLSASAELKQILAHMDARIHKLYMALPTNAMLIICTGHGDTAVVDRLRRMLAEESESNFCREQIVEILEELQARAEVALCFVGVKH* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0255 572 MobiDBLite consensus disorder prediction 1 24 - -
Lan5g0255 572 SMART exoiiiendus 216 375 IPR013520 -
Lan5g0255 572 Pfam Exonuclease 219 365 IPR013520 -
Lan5g0255 572 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 10 557 - -
Lan5g0255 572 Gene3D - 215 375 IPR036397 GO:0003676
Lan5g0255 572 CDD REX1_like 218 367 IPR034922 -
Lan5g0255 572 MobiDBLite consensus disorder prediction 1 29 - -
Lan5g0255 572 PANTHER LD29573P 10 557 - -
Lan5g0255 572 SUPERFAMILY Ribonuclease H-like 217 370 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0255 Lan-Chr5 3327966 3343560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0255 212 365 C2H2 Transcription Factor Family AT2G48100 30.769 7.00e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0255 K14570 - gmx:100802793 902.508