Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0253 ATGGGTAGTAGAACTAGAAAAGTGAACATTAACACTGAGGAAACTAACAAATTTGTGAAAGGGATGCCAAGCTATGCTCCTTCATTACCTTCTTCTAGTTCCATGGGCGTAGAAGGAACTACTGTTCCTCCATCTCGAGTTTCTGAATTTGGACACCTTGAGCAATCTATTGGATTTCGTTTGGAGGACGCTATCAATCTTAGCAGAAATCCAGTGTTCAATCAAATGAAGTCACATAGCCAAGGTCCCGGTTCTAATGTTCAGTTTGGTGCTTTGGGCAAGTCTGTTGCAACCTCAGATGCAAATCTCTTTGCCACAATTGCTGGGACACAGGCATTGCCGTTACAAAGAGCCTTGCCAGCAAATTTAGCTTACACATCGGCTGGTCATCGTGAGAACTGGGGGGAGTCCGGCATGGCAGTTGCAAGCCCTGTGACTGGTTCTTCAACAGATGACACTGATGATAAAAATCAATGGTCTGAAAGGGATCAATTAGCTGTTGCATCCGCTGATTCCAGTGATAGATCAAAAGATAAATCAAACCAAAAGACGTTACGACGGCTAGCTCAAAATCGGGAGGCTGCAAGGAAAAGCAGACTGAAGAAAAAGGCATATGTTCAACAATTAGAGAGTAGCAGACTGAAACTAACCCAGCTTGAGCAAGAGCTCCAGAAAGCCCGCCAGCAGGGCTCATTTATTTCAGGCACGGGAGATCCGGGCCATTCAATGAGTGGAAATGGTGCTATGCAGTTTGATGCAGCGTATGCACGATGGTTAGAAGAGCACAATAGGAAAATCAATGAGCTTATGGCTGCAGTAAATTCTCATGCCGGAGATATTGAACTTCGTACAATTGTAGACAATGTCATGACACAATTTGATGAGATCTTCAAGCTGAAAGGTATTGCAGCTAAAGCTGATGTTTTCCACATTCTGTCCGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATATGGATTGGAGACTTTCGCTCATCCGAGCTTCTCAAGCTGCTTGCAAATCAACTCGAGCCTTTGAGCGAGCAACAATTAATGGGCATCTACAACTTGCAGCAGTCTTCCCAGGAAGCCGAAGATGCTTTGTCCCAAGGAATGGATGCATTGCAGCAATCACTGGCTGAGACATTGGCTAATGGTGCTCCTAGCCAATCAGGGTCTTCAGGAAATGTGGCAAATTATATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTTGAGGGGTTTCTTCACCAGGCTGATAATCTGCGGCAGCAAACCTTACAACAAATGCTTCGGATATTAACAACCAGGCAATCAGCTCGAGCTCTTCTTGCAATAAGCGACTATTTTTCTCGGCTGCGAGCCCTAAGCTCTTTGTGGCTTGCCCGGCCAACAGAGTAA 1407 0.4556 MGSRTRKVNINTEETNKFVKGMPSYAPSLPSSSSMGVEGTTVPPSRVSEFGHLEQSIGFRLEDAINLSRNPVFNQMKSHSQGPGSNVQFGALGKSVATSDANLFATIAGTQALPLQRALPANLAYTSAGHRENWGESGMAVASPVTGSSTDDTDDKNQWSERDQLAVASADSSDRSKDKSNQKTLRRLAQNREAARKSRLKKKAYVQQLESSRLKLTQLEQELQKARQQGSFISGTGDPGHSMSGNGAMQFDAAYARWLEEHNRKINELMAAVNSHAGDIELRTIVDNVMTQFDEIFKLKGIAAKADVFHILSGMWKTPAERCFIWIGDFRSSELLKLLANQLEPLSEQQLMGIYNLQQSSQEAEDALSQGMDALQQSLAETLANGAPSQSGSSGNVANYMGQMAMAMGKLGTLEGFLHQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPTE* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0253 468 CDD bZIP_HBP1b-like 183 235 - -
Lan5g0253 468 MobiDBLite consensus disorder prediction 26 41 - -
Lan5g0253 468 Pfam Seed dormancy control 266 340 IPR025422 GO:0006351|GO:0043565
Lan5g0253 468 SMART brlzneu 179 272 IPR004827 GO:0003700|GO:0006355
Lan5g0253 468 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 63 468 - -
Lan5g0253 468 MobiDBLite consensus disorder prediction 135 185 - -
Lan5g0253 468 SUPERFAMILY Leucine zipper domain 183 226 IPR046347 GO:0003700|GO:0006355
Lan5g0253 468 Coils Coil 259 279 - -
Lan5g0253 468 MobiDBLite consensus disorder prediction 1 43 - -
Lan5g0253 468 Gene3D - 181 233 - -
Lan5g0253 468 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
Lan5g0253 468 ProSiteProfiles DOG1 domain profile. 248 465 IPR025422 GO:0006351|GO:0043565
Lan5g0253 468 MobiDBLite consensus disorder prediction 1 18 - -
Lan5g0253 468 Coils Coil 202 229 - -
Lan5g0253 468 PANTHER TRANSCRIPTION FACTOR TGA9 63 468 - -
Lan5g0253 468 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700|GO:0006355
Lan5g0253 468 Pfam Basic region leucine zipper 179 225 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0253 Lan-Chr5 3261951 3269457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0253 139 468 bZIP Transcription Factor Family AT3G12250 72.508 5.98e-168 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lan5g0253 DOG1 3.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0253 K14431 - gmx:100780071 686.026