Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0244 ATGGAGAGTGAGATTCTAAAAACTCATTGGATGGAAGAACCCAAACTCTCTCAAGAAAATCTCCCACCACTACCAACCTCATCATGGACCATAAAAAACGACGACGTTTCATCCTTCAAATCATTTCTTCAAGTTAATGAATGGTTCATGAACTCTTCCATAACCCAAAATGAAAATTTTCTCATTCAACCTTTGAACCCTTCTTTCACTCCTACACCATTTTTCAACTTAAATAGCAACAACCCTTTTACTAATGGTTTTGATTATGGGTCTGAACCTGTTTTACTCAATTCCAATTCCTCTATTCTGATGAGTTTCAACAATAATAGTAACATTCTTGAGCTGAGTTCAAACCCCGAGTTCAATCCAACTCGTGAAGTTGAACTCGGTGGAGGGTTTGATCACAACACAATGTGTGTGGTTGGAGAACAATGCCATGGTTCTGGAGCTTCGAATTCGACGTTTTTGAACCATGGTAGTGTTTTTCAGCAGCTGGGTACTGAGGTTCCGGCTCCGGCATTTCGCCAAGGCCCGGTTGATAAGCTGGGGGCCTTGGAGATAAGGGCTGCGGCGCGGCTCAGTGCGATGGAGGAGATGGAGAAGAAGAGGAGGATTGGGTTGAATGATGATTCTGATGATGATGATGTTGATGAGATTGATAAGTATGAGGAGAATGTGAATAATGGAGGGAACAATTTTGAAGGAAATAATAATAATGGTGATAATAATAATAATAATGGTGGAAGTCAGAAAGGGAATAGGAAGAAGAAAGTGGCGCCGGCAAAGAATCTCATGGCGGAGAGGCGCCGCCGGAAGAGACTCAATGATAGGCTTTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGACAGGGCTTCAATACTTGGGGATGCAATTGAATACTTGAAAGATTTAATAGAGAAGATTAATGATCTTCATAATGAGCTGGGGTCAACTCCATCTGGCTCATCTCTGACACCTCCTTCGAGCTTTCACCCGGTGACACCCAGTCTGCCTACCCTTCCTTCTCGGGTGAAAGATGAATTATGTCTTAGCTCCTTGGCAACCCCTAAAAGTCACTCGCCTAAGGTTGAGGTTAGGCTAAGAGAAGGGAGAGCTATCGATGTCCACATGTTTTGTGCCTGCAAGCCCGGTCTTTTCCTTTCCACAATGAGGGCATTGGATAGCCTCGGATTGGATGTTCAGCAAGCCGTTATCAGCTGTTTCAATGATTTTGTTTTAGATGTGTACAGAGCTGAGCAATGCAGAGAAGGTCTGGATCTTCTCCCTGAGCAGATTAAAACCGTGTTGTTACAGGCTGCCGATTTTCGTGGTATGATGTGA 1350 0.4356 MESEILKTHWMEEPKLSQENLPPLPTSSWTIKNDDVSSFKSFLQVNEWFMNSSITQNENFLIQPLNPSFTPTPFFNLNSNNPFTNGFDYGSEPVLLNSNSSILMSFNNNSNILELSSNPEFNPTREVELGGGFDHNTMCVVGEQCHGSGASNSTFLNHGSVFQQLGTEVPAPAFRQGPVDKLGALEIRAAARLSAMEEMEKKRRIGLNDDSDDDDVDEIDKYEENVNNGGNNFEGNNNNGDNNNNNGGSQKGNRKKKVAPAKNLMAERRRRKRLNDRLYMLRSVVPKISKMDRASILGDAIEYLKDLIEKINDLHNELGSTPSGSSLTPPSSFHPVTPSLPTLPSRVKDELCLSSLATPKSHSPKVEVRLREGRAIDVHMFCACKPGLFLSTMRALDSLGLDVQQAVISCFNDFVLDVYRAEQCREGLDLLPEQIKTVLLQAADFRGMM* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0244 449 CDD ACT_UUR-ACR-like 385 419 - -
Lan5g0244 449 CDD bHLH_AtAMS_like 261 332 - -
Lan5g0244 449 SMART finulus 264 313 IPR011598 GO:0046983
Lan5g0244 449 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 324 IPR036638 GO:0046983
Lan5g0244 449 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Lan5g0244 449 MobiDBLite consensus disorder prediction 225 252 - -
Lan5g0244 449 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 195 449 - -
Lan5g0244 449 PANTHER BHLH TRANSCRIPTIONAL FACTOR 195 449 - -
Lan5g0244 449 MobiDBLite consensus disorder prediction 223 262 - -
Lan5g0244 449 Gene3D - 249 321 IPR036638 GO:0046983
Lan5g0244 449 Pfam Helix-loop-helix DNA-binding domain 265 307 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0244 Lan-Chr5 3089313 3093580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0244 78 422 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.000 6.42e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan5g0244 HLH 8.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0244 - - lang:109353510 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0244 5 3089313 3093580 Lan5g0244 5 3089313 3093580 ECH
Lan5g0244 5 3089313 3093580 Lan8g1038 8 12463817 12468605 LSH