Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0242 ATGAGTAACAATTATAACACCATCTTCTCAAACCAAAACCCACATGGGAAAATAATCACTTCTGATCCTATTGAGATGCAAGATCCTTCTCAGCCTATACATCAAGGCAATGAAAAGAAAAGACATTATAGAGGTGTAAGACAAAGACCATGGGGCAAATGGGCAGCAGAAATTAGAGACCCTAAAAAAGCAGCAAGAGTATGGCTTGGAACCTTTGACACAGCAGAAGCTGCAGCTTCTGCCTATGATGCTGCAGCATTGAAATTCAAAGGAAACAAAGCCAAGCTTAATTTCCCTGAACTCATTCCTTCTAATTCACCACCACAACCACCACCGCCACCGCCGCAACCGGTTTCTACTCAACCTTTTACATTATCATCTTCTTCAGATGAAGGGTTTCCAAACCTAATGCAATATGCACAAGTTCTTTGTAGTAGAGATGATGATGATCTACAACGTGCTGCTTCAGGCTTATATTATCATCAATATAATGAGTCATTTTCAGCTCCAACATTATTCTCAACAACATCATCAGCAAATGCAACATCATCTTCGAATAATGTTGTGTCTGATCAACATGAGTTTGGAGATTATGGTTCTTATTTTTTTAATGAAGAAAGGAATAGGAGGGAATAG 636 0.3899 MSNNYNTIFSNQNPHGKIITSDPIEMQDPSQPIHQGNEKKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAASAYDAAALKFKGNKAKLNFPELIPSNSPPQPPPPPPQPVSTQPFTLSSSSDEGFPNLMQYAQVLCSRDDDDLQRAASGLYYHQYNESFSAPTLFSTTSSANATSSSNNVVSDQHEFGDYGSYFFNEERNRRE* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0242 211 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Lan5g0242 211 MobiDBLite consensus disorder prediction 1 48 - -
Lan5g0242 211 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Lan5g0242 211 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Lan5g0242 211 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Lan5g0242 211 MobiDBLite consensus disorder prediction 1 33 - -
Lan5g0242 211 MobiDBLite consensus disorder prediction 98 131 - -
Lan5g0242 211 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 18 109 - -
Lan5g0242 211 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 113 201 - -
Lan5g0242 211 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Lan5g0242 211 PANTHER DNA-BINDING DOMAIN 113 201 IPR044808 GO:0003700|GO:0009873
Lan5g0242 211 PANTHER DNA-BINDING DOMAIN 18 109 IPR044808 GO:0003700|GO:0009873
Lan5g0242 211 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Lan5g0242 211 MobiDBLite consensus disorder prediction 103 120 - -
Lan5g0242 211 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Lan5g0242 211 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0242 Lan-Chr5 3059959 3062065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0242 27 102 AP2-EREBP Transcription Factor Family AT5G61890 77.778 1.42e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan5g0242 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0242 - - ccaj:109818971 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0242 5 3059959 3062065 Lan5g0242 5 3059959 3062065 ECH
Lan8g0127 8 2041464 2043255 Lan5g0242 5 3059959 3062065 ECH