Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0233 ATGGAAAATGATATGGAAGGTGTTTATTGGTGCAACATATGCTCTAAAATGGTGAATCCAATGAATGAAAGTGAGAACAAATGTCCAATCTGTGAGACAGAGTTTTCTGATGTAATGGAAAGCCTAAGAGGCCAAAATCATGAGAGTATTGCTGATTTAAGGTCTACTTGGGTGTTCTCGCTTTACGCGCCGATCTTTCTAGGCTTGATGGGTGCTTTTATCCCTTCTCTAGCAAGCATTACTACTTCCCAAGGAAGTAGTAGTAGCGGCGGCTCGAGAGGCGAGGAAGAGGTTGAACAAGAAAGGGAGAATAATGAACTTGTACTTCAGAGAAGGCGAAGAGCATCAACTTCTATGATGCAACTTTTCCGCGGTTTACATGTTAGGATGATGTCTGAATCAGATAACCCGGAAAACAATAGAAACATGGGTAACAACAACAGTATGCTTGTTATTGATCCTTTCAACGACAGCGCCTTGATTCTGCGAGGTCCTAACTTAAACCACACGGCGACGAGTAGTCCGAATGAGACTGTTGTTGGTTCCTTAAGTGACTTTCTTGTAGGGTCTGGCTTAGACTTGTTACTAGAGCATTTGGCACAGAATAGCCCAAGTGGATATGCAAGTGTTAACCCTCCTGCACTAAAGGCTGCAATTGAAGCAATGCCTAATGTGATCAATGAGGAAAAGTTGCAATGCACTGTTTGTTTGGAGGATCTAGAGATTGGAAAGGAAGCTAAGGAAATGCCATGTAAGCATAAATTCCATGGTGACTGCATAATCTCATGGCTAAAACTCCATAGTTCGTGTCCGGTTTGCAGGTTTCGAATGCCATCGGAGGATTCAAGTGCCGAAGCTAATACGGAAATGGGAAATGAAGGCAATCAGAACAATGAGATGGTTAGAGCTAGAGAAGAGAGAGTGAGAAATAGAAGAACTTGGTTTCCAAGGTTGGAGTCATTTAATAATTTTCTTCCTTCTCCATGA 987 0.4225 MENDMEGVYWCNICSKMVNPMNESENKCPICETEFSDVMESLRGQNHESIADLRSTWVFSLYAPIFLGLMGAFIPSLASITTSQGSSSSGGSRGEEEVEQERENNELVLQRRRRASTSMMQLFRGLHVRMMSESDNPENNRNMGNNNSMLVIDPFNDSALILRGPNLNHTATSSPNETVVGSLSDFLVGSGLDLLLEHLAQNSPSGYASVNPPALKAAIEAMPNVINEEKLQCTVCLEDLEIGKEAKEMPCKHKFHGDCIISWLKLHSSCPVCRFRMPSEDSSAEANTEMGNEGNQNNEMVRAREERVRNRRTWFPRLESFNNFLPSP* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0233 328 SUPERFAMILY RING/U-box 222 279 - -
Lan5g0233 328 Pfam Ring finger domain 232 274 IPR001841 -
Lan5g0233 328 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Lan5g0233 328 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 2 326 - -
Lan5g0233 328 SMART ring_2 233 273 IPR001841 -
Lan5g0233 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 280 IPR013083 -
Lan5g0233 328 MobiDBLite consensus disorder prediction 94 108 - -
Lan5g0233 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 326 - -
Lan5g0233 328 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0233 Lan-Chr5 2869561 2871495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0233 133 300 C3H Transcription Factor Family AT1G26800 33.136 9.24e-25 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0233 K11982 - gmx:100790855 429.098