Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0222 ATGAATGATCTTCTAACGGAATCATTTGAGATATCGCGCGGCCAAGGTCACGGAGGTGGAGATGTTGAGTTAGGAGCATATGCATTAAATTCAGGAGAACTAGGCTTGGATTTCTTCTTCAAAAAGGTTCAAGATCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGGCCAAGCTACAGGAAGCCCATGAGGAATCCAAATCTGTCACCAAAGCTCCTTCCATGAAAAATATAAAGCAGAGAATGGAGCAAGATGTTGACGAAGTTAAGAAAACTGCGCATCATATAAAGACCAAACTTGAAGAACTGGACAAAGAGAATTTGGCAAATAGACAGAAGCCTGGGTGTGGAAAAGGATCAGGTGTCGATCGGTCTAGAACAGCTACAACCATTTCCTTGAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGACCCTAAGAGAAGCGATCCATCAAGAATATCGCGAGGTTGTTGAGAGGCGTGTCTTTACAGTAACTGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGAGATAGTGAGCAAATTTTCAAGAAGGCAATTCAGGAACAAGGGCGAGGCCAGATAATGGACACCTTGGCAGAAATTCAAGAGCGACATGATGCAGTTAGAGATGTTGAGAGGAAACTTCTTGATTTAAACCAGATATTTATGGATATTGCTGTGTTAGTGGATGCACAAGGAGACATGCTCAACAACATAGAAACACAGGTTTCAAGTGCAGTAGAACATGTGCAAAGAGGCAATAGTGCACTCCACAAGGCCAAGAAACTACAAAGGAACTCTAGAAAATGGATGTGCATTGCAATCATGATACTTCTTATCATTATTGTTATCATTGTAGTTTCTGTCATCAAACCATGGGGTAACAAAAATGGTGCTTAG 924 0.4091 MNDLLTESFEISRGQGHGGGDVELGAYALNSGELGLDFFFKKVQDLDKQYAKLDKLLAKLQEAHEESKSVTKAPSMKNIKQRMEQDVDEVKKTAHHIKTKLEELDKENLANRQKPGCGKGSGVDRSRTATTISLKKKLKDKMAEFQTLREAIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFKKAIQEQGRGQIMDTLAEIQERHDAVRDVERKLLDLNQIFMDIAVLVDAQGDMLNNIETQVSSAVEHVQRGNSALHKAKKLQRNSRKWMCIAIMILLIIIVIIVVSVIKPWGNKNGA* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0222 307 Gene3D - 34 160 - -
Lan5g0222 307 Coils Coil 80 107 - -
Lan5g0222 307 SUPERFAMILY t-snare proteins 35 261 IPR010989 GO:0016020|GO:0016192
Lan5g0222 307 PANTHER - 3 299 - -
Lan5g0222 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Lan5g0222 307 PANTHER SYNTAXIN 3 299 IPR045242 -
Lan5g0222 307 Coils Coil 135 155 - -
Lan5g0222 307 Coils Coil 43 73 - -
Lan5g0222 307 CDD SynN 36 193 IPR006011 GO:0016020
Lan5g0222 307 SMART SynN_4 31 157 IPR006011 GO:0016020
Lan5g0222 307 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lan5g0222 307 SMART tSNARE_6 201 268 IPR000727 -
Lan5g0222 307 Gene3D - 198 299 - -
Lan5g0222 307 Pfam SNARE domain 242 294 IPR000727 -
Lan5g0222 307 CDD SNARE_syntaxin1-like 205 267 - -
Lan5g0222 307 Pfam Syntaxin 39 241 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0222 Lan-Chr5 2763917 2772158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0222 1 307 SNARE and Associated Proteins AT3G03800 72.964 5.18e-154 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0222 K08486 - gmx:100306329 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0222 5 2763917 2772158 Lan20g1465 20 21358369 21365226 LSH