LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan5g0207	ATGGCGAGGAAGCGAAAGCTGCCACCTAATTCCACTCCATCGGAACAACCACCGCTGAAGCAACATCAACAACAACAACAACAACAACAACCTCAACTCGATTCAGATGAAGAGTACGAAGAAATCGAAGTCGAAGAAGAAGTAGAAGAATTAGAACAAGAAGAAGAAGACGAAGAAGAACTAGAAGAACAAAACGACGTCGTTCTATATAATTACAATAATAATCAGACGGTTAATTTGCCCTCCACGTCATCAACCCTCGCCGGCGATGATGACGATGATCCGATTCAGAATCTTCTAGAACATTTCGGAAAGGACCAACTCGCGACGCTTCTCTGCGACGCCGCCACCAACCACCGCGATGTGGCGGACCGTATCCGTAACACGGCCAATGCGGATCCTTCCCACCGGAAGATCTTCGTCCACGGTCTCGGCTGGGACACCACAGCCGAAACCCTAACCTCGGCGTTCCGTCAATACGGCGAGGTTGAAGACTGCAAAGCCGTGGCTGACAAGATCACCGGAAAGTCCAAGGGCTATGGCTTCATCCTTTTCAAGACTCGCTCCGGTGCTCGTAAAGCGCTGGAGCAGCCACAGAAGAAGATTGGGAATCGATTGACTTCGTGCCAGCTGGCATCCCTTGGCCCTGTTCAGCAGCAGCCGAACAACGTGGCACAGGCGAGTTATAATAATTCGCATGCGCCGAGTAAATCGGCTGCATTTGCGGTACCAGTGGGGTCAGAATACACACAGAGGAAGATTTTTGTGAGTAACGTGGGGGCTGAATTGGATCCCCAGAGGTTGCTTGCCTTTTTCTCGAGGTTTGGGGAGATAGAGGAAGGACCTTTGGGACTTGATAAAGTGACTGGGAAACCGAAGGGGTTTTGTTTGTTTGTGTATAAGAGAATAGAGAGTGCAAAGAAGGCATTGGAGGAACCACATAAGGCGTTCGAAGGCCATGTTTTGCATTGCCAGCAAGCCATCGATGGTCCCAAGCCAGGGAAGTTACAACAACAACAGCAACAACCTCAGACTCAGAGGATGCCGATTGCGGTGGGAGCAGCGACGACAACACCAATGCAGTTTCAGAGAAGTGGCAATTCTGGCTTTGTCAGCGGTGCGTTGGCAGCCACACCGGGACACTTGATGGCACCGGCTGGACCGGTGATTGGATTTAATCAAGGAACTGCCGCAGTGCCTATGCAGACGCTGGATCCGGCTCTCGGGCAGGCATTGACAGCGCTGCTCGCATCTCATGGCGCTGCTGGCTTGGGGCTGAATGGTTTGTTGGGAACACTAGGATCATCGGCAGCAGTAAACCCCGGGGTCCCATCTGTGGGTCATGGAATGCATGTTGGTTATAATAGTCAGGCAAATGTGAATCCCGGAACTATTGGAGGATATGGGAATCAAGTTGGATTTCAGGGTGCATATCCAAACCAGCAGGTGGGACAAGGTGGCTCTGCAAGAGGACAGCAACAACAGCAGCAGCGCAATGCTGGGCAATATGGCGGTGTTGCCCCTTTCACGGGGCACTAG	1539	0.5172	MARKRKLPPNSTPSEQPPLKQHQQQQQQQQPQLDSDEEYEEIEVEEEVEELEQEEEDEEELEEQNDVVLYNYNNNQTVNLPSTSSTLAGDDDDDPIQNLLEHFGKDQLATLLCDAATNHRDVADRIRNTANADPSHRKIFVHGLGWDTTAETLTSAFRQYGEVEDCKAVADKITGKSKGYGFILFKTRSGARKALEQPQKKIGNRLTSCQLASLGPVQQQPNNVAQASYNNSHAPSKSAAFAVPVGSEYTQRKIFVSNVGAELDPQRLLAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKRIESAKKALEEPHKAFEGHVLHCQQAIDGPKPGKLQQQQQQPQTQRMPIAVGAATTTPMQFQRSGNSGFVSGALAATPGHLMAPAGPVIGFNQGTAAVPMQTLDPALGQALTALLASHGAAGLGLNGLLGTLGSSAAVNPGVPSVGHGMHVGYNSQANVNPGTIGGYGNQVGFQGAYPNQQVGQGGSARGQQQQQQRNAGQYGGVAPFTGH*	513

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan5g0207	512	Gene3D	-	245	349	IPR012677	-
	Lan5g0207	512	PANTHER	GEO13361P1-RELATED	21	512	-	-
	Lan5g0207	512	MobiDBLite	consensus disorder prediction	479	503	-	-
	Lan5g0207	512	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	252	341	IPR000504	GO:0003723
	Lan5g0207	512	SMART	rrm1_1	138	210	IPR000504	GO:0003723
	Lan5g0207	512	SMART	rrm1_1	253	325	IPR000504	GO:0003723
	Lan5g0207	512	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	254	323	IPR000504	GO:0003723
	Lan5g0207	512	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	139	205	IPR000504	GO:0003723
	Lan5g0207	512	SUPERFAMILY	RNA-binding domain, RBD	249	344	IPR035979	GO:0003676
	Lan5g0207	512	CDD	RRM_RBM24_RBM38_like	252	327	-	-
	Lan5g0207	512	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	137	229	IPR000504	GO:0003723
	Lan5g0207	512	Coils	Coil	34	71	-	-
	Lan5g0207	512	Gene3D	-	112	231	IPR012677	-
	Lan5g0207	512	MobiDBLite	consensus disorder prediction	1	63	-	-
	Lan5g0207	512	MobiDBLite	consensus disorder prediction	16	33	-	-
	Lan5g0207	512	SUPERFAMILY	RNA-binding domain, RBD	127	222	IPR035979	GO:0003676
	Lan5g0207	512	MobiDBLite	consensus disorder prediction	479	512	-	-
	Lan5g0207	512	MobiDBLite	consensus disorder prediction	34	63	-	-
	Lan5g0207	512	PANTHER	-	21	512	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan5g0207	Lan-Chr5	2463450	2475116	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan5g0207	251	340	C2H2 Transcription Factor Family	AT2G19380	35.556	9.64e-10	59.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan5g0207	K12741		-	qsu:112025393	511.531