Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0193 ATGGCTGTAACTGAGAATTGTGAGAAAAATGTTGGTACAAGCAATGGACTTGAGGTACTTGATGGACAAGCTAGTGAAATTTCATCAACTGGCGCTACAATGAGCAACAATGCAGTTTCCCAACATCCAGAAGAGATTGGCGAAACAAAGAAATGTTTAGTGCAGCAGGAAGTTAGCCTTGAACTTCAAGGCGAGGGTAAGGCTAAGTTTGGCAGTGATGAGAAGAGGATGATGAGTAACTGTAGTAATGATGAAAAGTCGGTTCAAAAGAAAGCCAAGGTCAATCATAGTGATAGTGGAGTGGCATGTGTTGATGGTGAGGATGATCTTCTCTCAAATTATACCCATGCTTTTCCTCATGAAATGGACAAAAGGACCATTTTTAGGTTAAAAGAGATGTTGAGGCTTGTCAATCTTAAAAGGCTTCAATCTGTAGAGGAAGAGAAGAATAGATGCAAGAACGAAGAAGATAATAATAATTTGGGAGCTGGTGAATTTTCAAGGAAAAGGCTTCGTTCTACTACTCGAAGACAAGTACCCAAAGCTCCTGATTATCCATGGTATGCTGTAAACAAAAGAAGTTGCAATTTTTTCAGATTGGTTTGTAAGGATATCAGCCATGGTGAAGAAGAATATAGCATTCCTGTTATCAATGAGTGTGATTTTCCTCCTGTTGTGCCTGCTAGCTTCACATATATCAAATCTATGCAAGTTTCAGACAATGTGAAGGTTCCAGTCAGAGCTGATGGATGCCGGTGTAAGGAAAGTTGTACGGAGGCACGGAGTTGTTCCTGTGTTCATCTGAATGGCTCTGCTCCATATGTTCCTCAAGATGGTGGAAGGTTGGTTGCACCAAGAGATGTGGTGTTTGAATGTGGGCCAAAATGTCGATGTGGACCAGATTGTGGTAATAGAGTTTCCCAGTGTGGAATAAAGTATAAGCTTCAGGTTTTTCGTATGCCTGACAAAGGTTGGGCTGTCAGAACACTGGAAAAGATTCCTGAGGGTGCACCGGTTTGTGAATACATCGGTATACTTAAGAGAAGTGATGAGGTAGAGAATGATATAGATAATAGCTACTTCTTTGAGATTGATTGTAAGCAGACAATCAATGAGATAGAGGGAAGGGAGAGACGGTTGTGTCATGTGCCATTGCCCACTAGCTCATCGGTTGATAATGAGACAACAGAAACTGAACCTGAGTTCTGCATAGATGCCGGCTCCTATGGTAATGTTGCAAGGTTTATCAACCACAGTTGTGAGCCAAACCTCTTCGTTCAGTGTGTCCTAAGCGGCCACCATGACATCAGACTAGCTCGGGTGGTGTTATTTGCTGCAGCAGATATAGGTCCTTACCAAGAACTTACATATGACTATGGTTACCAACTTGATAGTGTTATTGGAGCAGATGGAAATATCATTCAGATGTCTTGCCATTGTGGTGAACCTAACTGTCGTAAACGTTTGTACTAG 1473 0.4175 MAVTENCEKNVGTSNGLEVLDGQASEISSTGATMSNNAVSQHPEEIGETKKCLVQQEVSLELQGEGKAKFGSDEKRMMSNCSNDEKSVQKKAKVNHSDSGVACVDGEDDLLSNYTHAFPHEMDKRTIFRLKEMLRLVNLKRLQSVEEEKNRCKNEEDNNNLGAGEFSRKRLRSTTRRQVPKAPDYPWYAVNKRSCNFFRLVCKDISHGEEEYSIPVINECDFPPVVPASFTYIKSMQVSDNVKVPVRADGCRCKESCTEARSCSCVHLNGSAPYVPQDGGRLVAPRDVVFECGPKCRCGPDCGNRVSQCGIKYKLQVFRMPDKGWAVRTLEKIPEGAPVCEYIGILKRSDEVENDIDNSYFFEIDCKQTINEIEGRERRLCHVPLPTSSSVDNETTETEPEFCIDAGSYGNVARFINHSCEPNLFVQCVLSGHHDIRLARVVLFAAADIGPYQELTYDYGYQLDSVIGADGNIIQMSCHCGEPNCRKRLY* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0193 490 SUPERFAMILY SET domain 198 466 IPR046341 -
Lan5g0193 490 SMART preset_2 202 297 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan5g0193 490 Gene3D SET domain 196 490 IPR046341 -
Lan5g0193 490 SMART set_7 313 466 IPR001214 GO:0005515
Lan5g0193 490 ProSiteProfiles Post-SET domain profile. 474 490 IPR003616 -
Lan5g0193 490 ProSiteProfiles Pre-SET domain profile. 249 310 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan5g0193 490 Pfam Pre-SET motif 205 305 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan5g0193 490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 195 489 - -
Lan5g0193 490 Pfam SET domain 324 460 IPR001214 GO:0005515
Lan5g0193 490 ProSiteProfiles SET domain profile. 313 460 IPR001214 GO:0005515
Lan5g0193 490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 195 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0193 Lan-Chr5 2330839 2337749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0193 200 490 EF-hand Containing Proteins AT5G13960 59.184 1.70e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan5g0193 SET 4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0193 - K11420 lang:109347435 1019.61