Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0191 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTGTTAAGAGAGGTCCATGGACAATTGAGGAAGATCACAAGCTTATGAATTTCATCCTCAACAATGGTATCCATTGTTGGAGAACAGTTCCCAAACTTTCAGGTTTACTAAGATGTGGAAAGAGTTGTAGATTGAGATGGATTAATTATTTGAGGCCAGATCTTAAGAGAGGTGGCTTTACTGAAATGGAAGAGGATCAAATTATACAACTACATTCACTTCTTGGTAACAGATGGTCTAAGATTGCAACACATTTTCCTGGAAGAACAGACAACGAAATCAAGAACCACTGGAACACAAGAATTAAGAAGAGGTTGAAGCTCCTTGGTCTAGACCCTATGACCAAGAAGCCAATTGAGCAAATGGAACATTTTGATAATGGTGAAAAAAATAAGACATACCCACATCCAAATACTTCAAAAGGGTCAGAAGAAAATATAGAGATCAAGTCCTTGGACAATAATGGGACCAAAGATATGCCAAAAACAGAAGGGAAAATAGAAGAAAACAAGGTTACATGGGATGTTGAACTTCACAACTATGAAAACCAATGTTCCCAAGTTGAAATGGGATCATGGATAAGCCAAGAAAATAACACAAGTGCTAGCTCTTATTGTAGTTCTTCTTTCTCTCTTGATGAATCTAGTTACCCTTCTGTGGGTCAATCCCCTTATTTTCAAGGAGATTCCTTACAACAATGGGTTGATAATATGGATTCCATTCTCTCATGGGATAACTTCAATCCACTTGAAGATGATTTTCTCTTCTTGGAAAATAAGCAATAA 816 0.3713 MGRQPCCDKVGVKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLSGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSLLGNRWSKIATHFPGRTDNEIKNHWNTRIKKRLKLLGLDPMTKKPIEQMEHFDNGEKNKTYPHPNTSKGSEENIEIKSLDNNGTKDMPKTEGKIEENKVTWDVELHNYENQCSQVEMGSWISQENNTSASSYCSSSFSLDESSYPSVGQSPYFQGDSLQQWVDNMDSILSWDNFNPLEDDFLFLENKQ* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0191 271 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan5g0191 271 Gene3D - 12 67 - -
Lan5g0191 271 SMART sant 66 114 IPR001005 -
Lan5g0191 271 SMART sant 13 63 IPR001005 -
Lan5g0191 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan5g0191 271 CDD SANT 16 61 IPR001005 -
Lan5g0191 271 PANTHER MYB DOMAIN PROTEIN 40 2 249 - -
Lan5g0191 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan5g0191 271 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan5g0191 271 MobiDBLite consensus disorder prediction 134 154 - -
Lan5g0191 271 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 249 - -
Lan5g0191 271 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan5g0191 271 CDD SANT 70 110 IPR001005 -
Lan5g0191 271 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan5g0191 271 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lan5g0191 271 Gene3D - 69 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0191 Lan-Chr5 2306301 2307798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0191 1 160 MYB Transcription Factor Family AT5G16600 65.000 2.34e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan5g0191 Myb_DNA-binding 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0191 K09422 - gmx:100819471 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0191 5 2306301 2307798 Lan5g0191 5 2306301 2307798 ECH
Lan5g0191 5 2306301 2307798 Lan8g0980 8 11561847 11563194 LSH