Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0186 ATGGGAAAAGAGAAGGTTCATATTAACATTGTCGTCATTGGACATGTCGACTCTGGGAAATCAACCACCACTGGCCACTTGATCTACAAGCTAGGAGGTATTGACAAGCGTGTGATTGAGAGGTTCGAGAAAGAAGCTGCTGAAATGAACAAGAGATCCTTCAAGTATGCCTGGGTTCTTGACAAACTTAAGGCCGAGCGTGAAAGAGGAATTACCATTGATATTGCTTTGTGGAAGTTTGAGACCACTAGGTACTACTGCACTGTCATTGATGCTCCTGGACATCGTGATTTCATTAAGAACATGATTACAGGAACATCTCAGGCTGACTGTGCTGTCCTTATCATCGATTCTACCACTGGTGGGTTTGAAGCTGGTATTTCCAAGGATGGACAAACCCGTGAGCATGCTCTTCTTGCTTTCACTCTTGGAGTCAAGCAAATGATCTGTGGTCTTAACAAGATGGATGCCACTACTCCAAAGTACTCTAAGTCTAGGTATGATGAAATCGTGAAGGAAGTTTCTTCCTACCTGAAGAAGGTTGGTTACAACCCAGACAAAATTTCATTTGTGCCTATCTCTGGTTTTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGAGTGGTACAAGGGACCAACTCTACTTGAGGCTCTTGACCAGATCAATGAGCCCAAGAGGCCTACAGACAAGCCCCTCAGGCTTCCATTGCAAGATGTCTACAAGATTGGTGGTATTGGCACAGTGCCTGTGGGACGTGTTGAGACTGGTGTCGTGAAGCCTGGTATGTTGGTTACTTTCGGTCCAACTGGTCTGACAACTGAAGTTAAGTCTGTGGAGATGCACCACGAGGCTCTCCAGGAGGCTCTTCCAGGAGACAATGTGGGATTCAATGTTAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTTGTTGCCTCAAACTCTAAGGATGACCCTGCCAAGGAAGCTGCCAACTTCACATCCCAAGTCATCATCATGAACCATCCTGGCCAGATTGGAAATGGTTATGCACCAGTGCTTGATTGCCACACATCTCACATTGCTGTTAAATTTGGTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGGAGCTCGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCAGGTTTGGTTAAGATGATTCCAACCAAGCCCATGGTGGTTGAGACTTTCTCTGAGTATCCTCCTCTAGGTCGTTTTGCTGTGAGAGACATGCGTCAGACTGTTGCTGTTGGAGTCATCAAGAGTGTGGAGAAGAAGGATCCCACTGGAGCCAAGGTCACCAAGGCTGCAGCAAAGAAGAAATGA 1344 0.4613 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICGLNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKISFVPISGFEGDNMIERSTNLEWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMLVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLKNGDAGLVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAAKKK* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0186 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Lan5g0186 447 Gene3D Translation factors 229 316 - -
Lan5g0186 447 Gene3D - 1 226 IPR027417 -
Lan5g0186 447 PANTHER TRANSLATION FACTOR 1 446 - -
Lan5g0186 447 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lan5g0186 447 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 446 - -
Lan5g0186 447 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Lan5g0186 447 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
Lan5g0186 447 CDD EF1_alpha_II 230 320 - -
Lan5g0186 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Lan5g0186 447 Gene3D Translation factors 323 430 - -
Lan5g0186 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Lan5g0186 447 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Lan5g0186 447 CDD EF1_alpha_III 323 426 - -
Lan5g0186 447 CDD EF1_alpha 9 227 - -
Lan5g0186 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Lan5g0186 447 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lan5g0186 447 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Lan5g0186 447 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Lan5g0186 447 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Lan5g0186 447 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Lan5g0186 447 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Lan5g0186 447 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0186 Lan-Chr5 2275318 2278152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0186 1 440 Eukaryotic Initiation Factors Gene Family AT5G60390 95.000 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0186 K03231 - gmx:110008577 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0186 5 2275318 2278152 Lan8g0974 8 11528130 11531013 LSH
Lan5g0186 5 2275318 2278152 Lan20g1387 20 20597325 20599868 LSH