Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0145 ATGGGTTCTGTTTGTTGTTGTTTCAGTTTTGACGATTTTGAAGATTATGTAAACCCAAATAGCTCTGTGTATAGGAACTGTGCATGTCTCAGTTGCTTTATACAAAACCTCTTGACTGTGTATGCGGCAATATTCCGTAGAGGAGAAGTGCATTCAGTTCCTTCATCTCTTCAAGGGGCAGCATCCTTGTCTTCAACAGCATCACTTGATAATTCTCTATCGGACATGTACCGTTCTCCTCCAAGGCCCTTACCTTATGATGCAGAACCAAGGTATTTTCGTTCAAGGCGTGAGAAGGGTTCAAGTCATTTGAATGAGGAATCTGAACCTCTGAGAAGTGATGTAGATATGGACCTAGAATCTTTAAGTCCACGAGACAAATGGAATGAATGTGCCGGTGAAGATGGATCAAAGGAATATTGTTCCAAGTCCTCACTAAAACTTTCATCAGCAAAATCTACAACCGGAGTTGGGCTTGTCTATGCATCGTCAGAAGAGGAGGATGTCTGTCCAACTTGTCTCGAAGAATACACCAAAGAGAATCCGAAAATAATGACAAAATGCTCTCATCATTTTCATCTTGGGTGCATTTATGAGTGGATGGAGAGGAGTGACAGTTGTCCAGTTTGTGGAAAGGTGATGGTATTCGACGAAACGCTTACTCTCGATTAA 672 0.4167 MGSVCCCFSFDDFEDYVNPNSSVYRNCACLSCFIQNLLTVYAAIFRRGEVHSVPSSLQGAASLSSTASLDNSLSDMYRSPPRPLPYDAEPRYFRSRREKGSSHLNEESEPLRSDVDMDLESLSPRDKWNECAGEDGSKEYCSKSSLKLSSAKSTTGVGLVYASSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDSCPVCGKVMVFDETLTLD* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0145 223 MobiDBLite consensus disorder prediction 97 116 - -
Lan5g0145 223 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 219 - -
Lan5g0145 223 ProSiteProfiles Zinc finger RING-type profile. 170 210 IPR001841 -
Lan5g0145 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 217 IPR013083 -
Lan5g0145 223 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 219 - -
Lan5g0145 223 Pfam RING-H2 zinc finger domain 165 210 IPR024766 GO:0008270
Lan5g0145 223 SUPERFAMILY RING/U-box 164 217 - -
Lan5g0145 223 SMART ring_2 170 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0145 Lan-Chr5 1811816 1815531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0145 1 221 C3H Transcription Factor Family AT5G38895 58.108 6.42e-95 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0145 - - gmx:100777068 378.637