Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0111 ATGGGTTGCATTAACTCTAAGAATGCGGTTGCGAAAGTTTATTCGCCGCCCGTTGTTGCTGATCATCATAGTGTTGCTGGAACAATTGTAGAGAGTGGTCATCATCATCATGGTAATTCTGGTTCAAGGACTCATTCAGAGGAAAAGAAGTTGAAGAAGAATAACTCAAAGAAAAGTAATGGCTCTTTCAGTTTTAGGATTGGATTCTCACATCATAGGTATGTGGATGCAGAACAAAATGCTGCAGGGTGGCCATCATGGTTAACAGCTTCTGCAGCAGAAGCTATTCAAGGATGGATCCCTCTAAAAGCTGATTCTTTTCAAAAGTTGGAAAAGATTGGACAAGGTACCTATAGCAGTGTGTTCCAAGCACGCGAAGTTGAAAGCGGGAGGATGTTTGCATTGAAGAAGGTGCGGTTCGACAATTTACAACCCGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATTCTTCGAAGACTTGACCATCCAAACATCATGAAATTGGAGGGTATCATTACTTCCAGATTATCAAACAGCATATACCTCGTATTCGAATACATGGAGCATGACCTTGCCGGCCTAGTATCGCGCTCTGACATCACGTTCACTGACTCACAGATAAAATGTTACATGAGGCAGTTATTAAGTGGAATTGAGCATTGTCACGTACGCGGTATTATGCATCGCGATATTAAAGTATCAAATATCTTAGTGAATAATGAAGGTGTTCTCAAGATAGGAGATTTCGGATTAGCTAATACGATTAGCCCAAATAACAAGCATCCTTTAACCAGTCGTGTAGTGACTCTATGGTATCGCCCTCCCGAGCTCTTGATGGGATCAACCAGTTATGGAGTATCGGTGGATCTGTGGAGCGTAGGCTGTGTATTCGCAGAACTTTATCTAGGAAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAACTGCACAAAATTTTTAAGCTTTGTGGTACTCCATCTGATGAGTACTGGAAAAAATTTAAGCTTCCTCATGCAACAATGTTTAAACCTCAGACTACTTATGAAAGCTCTATCCGGGAAAGGTGCGAAGAGTTTCCCGAAACAGCTGTAAGCTTGCTTGAGACTTTTCTGTCCATCGATCCCTACAAGCGTGGAACTGCTTCCTCTGCTCTAATGTCTGAGTATTTCAACTCCATGCCATATGCATGTAGTCCATCAAACCTGCCAAAGTACTCACCTAGTAAAGAAATGGATGCTAAAAATCGGGGAGATGAATCCAGGAAAAAGACTGGAGGTAAAACGCGAGAGATTGTAACGTCAAGAAGGCAGCAAAGACGAAGCAATAAATCTTTCCAAGAACCGAAGGATTTCAATATAACAGCTTCAAAAGAGAACATTTCTCTAAATGCTAGTACAGATAAGGATGACGGTAAAGGACATCTTACGAGGGGAAAAGGAGGGAATATGCACAAAGAGCATTCAATGTACACCGTGTCAGAGGCTTCCCGGAATATGAACGTTGCTGCTAATAGCAAGGGCCATAGTGTACATTCAGGAAGCGTGCATGCTCCAGGATCTAGCGGTTTTACATGGGCGAAAAGGAGAAAACCGGATGCATCATCTGCACTATCAGACGGGGAAAGAAGCAAAATTAGTGCACTGGATCCGAACTTTGCGAAAGGCACATATGACTTGACCAGGCAAGCGATTTTAGAACGAAAATATAACGACAATCATGCTCACCGAGATGCGACTTCAAGGCATGTACTACAAAAGCACCAGTCTCAACATGGTCAACCAAAAGTGCAAATGGATTTTGATCCTTCAGAACTGCTAAATCCACAGGTCTACAAAGAATATGGTGCAAATTGGAATGAAAATGGTCTGAGGCATGGTAAATCAAGATTAGGAAGAGACAAATGA 1908 0.4219 MGCINSKNAVAKVYSPPVVADHHSVAGTIVESGHHHHGNSGSRTHSEEKKLKKNNSKKSNGSFSFRIGFSHHRYVDAEQNAAGWPSWLTASAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFQAREVESGRMFALKKVRFDNLQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRSDITFTDSQIKCYMRQLLSGIEHCHVRGIMHRDIKVSNILVNNEGVLKIGDFGLANTISPNNKHPLTSRVVTLWYRPPELLMGSTSYGVSVDLWSVGCVFAELYLGKPILKGRTEVEQLHKIFKLCGTPSDEYWKKFKLPHATMFKPQTTYESSIRERCEEFPETAVSLLETFLSIDPYKRGTASSALMSEYFNSMPYACSPSNLPKYSPSKEMDAKNRGDESRKKTGGKTREIVTSRRQQRRSNKSFQEPKDFNITASKENISLNASTDKDDGKGHLTRGKGGNMHKEHSMYTVSEASRNMNVAANSKGHSVHSGSVHAPGSSGFTWAKRRKPDASSALSDGERSKISALDPNFAKGTYDLTRQAILERKYNDNHAHRDATSRHVLQKHQSQHGQPKVQMDFDPSELLNPQVYKEYGANWNENGLRHGKSRLGRDK* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0111 635 SUPERFAMILY Protein kinase-like (PK-like) 101 397 IPR011009 -
Lan5g0111 635 SMART serkin_6 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0111 635 Pfam Protein kinase domain 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0111 635 MobiDBLite consensus disorder prediction 506 520 - -
Lan5g0111 635 MobiDBLite consensus disorder prediction 402 485 - -
Lan5g0111 635 CDD STKc_CDK9_like 107 391 - -
Lan5g0111 635 Gene3D Phosphorylase Kinase; domain 1 94 189 - -
Lan5g0111 635 MobiDBLite consensus disorder prediction 576 601 - -
Lan5g0111 635 MobiDBLite consensus disorder prediction 448 463 - -
Lan5g0111 635 MobiDBLite consensus disorder prediction 36 55 - -
Lan5g0111 635 MobiDBLite consensus disorder prediction 31 59 - -
Lan5g0111 635 MobiDBLite consensus disorder prediction 410 447 - -
Lan5g0111 635 MobiDBLite consensus disorder prediction 506 528 - -
Lan5g0111 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Lan5g0111 635 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Lan5g0111 635 Gene3D Transferase(Phosphotransferase) domain 1 190 430 - -
Lan5g0111 635 MobiDBLite consensus disorder prediction 464 485 - -
Lan5g0111 635 ProSiteProfiles Protein kinase domain profile. 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0111 635 PANTHER CELL DIVISION PROTEIN KINASE 1 565 - -
Lan5g0111 635 PANTHER CYCLIN-DEPENDENT KINASE 1 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0111 Lan-Chr5 1320639 1326050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0111 99 431 Core Cell Cycle Gene Families AT5G10270 46.132 2.89e-106 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lan5g0111 Pkinase 5.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0111 - - lang:109347355 1242.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0111 5 1320639 1326050 Lan8g0910 8 10860023 10865788 LSH
Lan5g0111 5 1320639 1326050 Lan20g1290 20 19470389 19475829 LSH