Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0101 ATGGAAGCAATGAGAAAAGTTTGTAGATACATGCAGGAAGATCAGGTGCCTAAATTGCCACCAGGTTTTCGGTTTCATCCAACTGATCAAGAACTCATAATTTACTACCTCTCTGAGAAGGTTCTTGACAACAACTTCAGTTCTATAGCCATTGCAGAAGTTGATCTCAATAAGTGTGAGCCATGGGAATTGCCCAGTATGGCCAAAATGGGTGAAAAAGAATGGTATTTTTTCTGTGTGAGAGACAAGAAATACCCAACTGGTCAAAGGACTAATAGGGCTACTAATGCTGGGTACTGGAAGGCCACAGGCAAAGACAAAGATATATATCAGGAAAGGGCACTGATTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCTCCAAAAGGTGAAAAAACTAACTGGGTCATGCATGAATATAGATTGGATGGAGAAAACTCTATGAACAATCTATCTAAATCCTCTAAGGAAGATTGGGCTGTGTATAGAGTTTTTCAAAAGATTTCCACTGGCAAAAGAATGCATGTTCCAATGTTATCAGAACTTTCTCCAGTGATTGATTCTCCTCTTCCTCCTCCATTGACAACAAATGCAATTGGAGAATCATCTTATGTGACCAATGTGAACACTTTTTCTGGTCCAAATCAAAGTGAGGATATGAAGGCAAAAAATAATGACATCATAGTTGATAGTTTTGAAACTCCTCCTATGTTGCCACCACCTTCATATTCTCCATACAATTCTGAAATTTTCCCTTCTACATGGGATTTTACCAACACTACCCTTCCTACACAATTTGCAAACAATCAAGTTGGGAATAATGCACAATACTCAGATGATGCTTATTTCATGAACCAAGATCAATCCATGATGAGTATGTTGATGGAAGACCATGGATCAAGTACAATGCACAACAACAACATCGACAACAACAACAACACCAACAACAACAACACCAACGACAACAACAACGATAATAACAACAAAAAAGCTAAGGAAAGTGACATTGATGCTGACAATTCCTCTGTGGTTCACAACAATGAAATGTTTCCAACATCTTCTGTTGGGAATAAGGGATGTTCATCTGCTTCTTTAGGGCATGTGGATTCTACTGGGTTCAAGTGGAATTTCTGA 1140 0.3842 MEAMRKVCRYMQEDQVPKLPPGFRFHPTDQELIIYYLSEKVLDNNFSSIAIAEVDLNKCEPWELPSMAKMGEKEWYFFCVRDKKYPTGQRTNRATNAGYWKATGKDKDIYQERALIGMKKTLVFYKGRAPKGEKTNWVMHEYRLDGENSMNNLSKSSKEDWAVYRVFQKISTGKRMHVPMLSELSPVIDSPLPPPLTTNAIGESSYVTNVNTFSGPNQSEDMKAKNNDIIVDSFETPPMLPPPSYSPYNSEIFPSTWDFTNTTLPTQFANNQVGNNAQYSDDAYFMNQDQSMMSMLMEDHGSSTMHNNNIDNNNNTNNNNTNDNNNDNNNKKAKESDIDADNSSVVHNNEMFPTSSVGNKGCSSASLGHVDSTGFKWNF* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0101 379 Gene3D NAC domain 28 172 IPR036093 GO:0003677|GO:0006355
Lan5g0101 379 MobiDBLite consensus disorder prediction 300 341 - -
Lan5g0101 379 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 338 - -
Lan5g0101 379 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Lan5g0101 379 MobiDBLite consensus disorder prediction 300 327 - -
Lan5g0101 379 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 10 338 - -
Lan5g0101 379 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Lan5g0101 379 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0101 Lan-Chr5 1241078 1243513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0101 19 197 NAC Transcription Factor Family AT5G07680 66.480 1.54e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan5g0101 NAM 1.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0101 - - lang:109347348 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0101 5 1241078 1243513 Lan5g0101 5 1241078 1243513 ECH