Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0096 ATGATGGAATTGGATCCTATGGATTTGCTTCGATCAAATCTCTCTCGAGTTCGGATCCCTGAACCCACCAATCGCATCTACAAGCAAGAATGCTGCTTATCTTACCAAACTCCTAGGTCAGAAGGTGGATTGTTCATAGACATGTTCAATTTCCTTGCTTTTGGGAAGGAATGTGTTGCTTGGAATTTTGAGAAAACTGGTAATCCTGTGTATTTGCATATAAAACAGACTAAGAAGATTGTACCAGAAGACAGGCCTTCAAAGAAACCCACTCTTTTGGCTATAGGTGTTGATGGGGGGTTTGATAATAATGACACTGAATATGAAGAAACTCGTACTATAGTTATTTTGCCTGACTATGTATCTCTTCCCTTCCCTTCAGTGGAATTGCCAGAGAAGGTAGTAGTTTCTCTCTATTTTATGATTATTGCTTTGTTTATCCCCCTCACCTGTTTTTGTTTTGAGGAGAGGTTGTATGCTAAAGATGAGTTTCAGGTACGGTTGGCTGCTGATGGCATCTTACTAGCTGAGGGTGCTGAACGGAAAGAGCAAGTTGCAGCTTGGACTGCTGCAGATACGAAACAAGTTAGTGCCTATGCAGTGAATTTACACCAGATTGACAATGGTGTTGTTATTCCTCCATCTGGGTGGAAATGTTCTCAGTGTGACAAGACAGAGAATCTTTGGCTAAATCTGACTGATGGAGTGATCCTTTGTGGGAGGAGAAACTGGGATGGAAGTGGTGGAAACAATCATGCCGTTGAATATTATAAAAAGACAGGCTACCCTCTTGCTGTAAAGCTTGGGACTATTACTGCTGATATCGAATCAGCAGATGTTTACTCCTATCCAGAGGATGATAGTGTATTGGACCCACTTTTAGCAGAACATCTGGCATTTTTTGGCATTGACTTCTCATCACTTCAAAAGACTGAAATGACGACTGCTGAAAGGGAACTTGACCAAAATACCAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAGGTAGTGGAACCGATATTTGGACCTGGATATACTGGATTGGTCAATCTTGGAAACAGTTGTTACTTGGCAGCAACTATGCAAGTTGTGTTTTCAACAGGATCCTTCTCTTCAAGGTACTATATAAACCAAAATTTGAAGAAGGCATTTGAGGCTGCTCCTGCTGATCCAACTGTGGACCTAAATATGCAGTTGACAAAGCTGGCTCATGGTCTTCTGTCTGGTAAATATTCTACCCCAGCTTCTCAGAATGATGATAATGCAAGTGTTGCTTCTTCAACTATCACTGATAAACAAGAAGGAATACCCCCACGTATGTTTAAAGCTGTAATTGCTGCTAGCCATCCTGAATTTTCATCTATGCGGCAACAGGATGCTTTAGAATATTTCCTTCATTTTATTGACCAAGTTGAACGAGCTAATAGTGGGAAAACTGAACTGGATCCTTCGAGGAGTTTCAAGTTTGGTATTGAAGATCGAATTTTGTGTTCCTCTGGAAAAGTTGCATATAATAGAAGGAACGATTACATACTTTCCCTTAATATCCCATTGCATGAAGCAACTAACAAAGAGGAATTGGAATCCTTTCACAAACTGAAAGCTGAGAAACTTTCTGAAGGAAAGGAAGTGTCCGGTGATGAGATTGTACGTCCCAGGGTGCCTTTAGAAGCTTGCCTTGCAAATTTTGCAGCTCCTGAGGAGATACATGATTTTTACAGCACCGCCTTGAAAACAAAGACAACAGCTGTAAAGACGGCTGGTCTGACATCATTCCCTGATTACCTGGTGTTACACATGAGGAAATTTGTTATGGAAGCGGGATGGGTACCCAAAAAGCTTGATGTGTATATAGATGTTCCTGATATTATAGATATTAGTCATATGCGTAGCAAAGGTCATCAACCTGGGGAAGAGCTGTTGCCAGATGGGGTACCTGAGGAAGATTCAGACGAACCTTGGGTCAATGAAGAAATTGTGTCGCAGCTGGTTTCCATGGGCTTTAACCATATTCATTGTCAGAAAGCTGTAATAAATACCTCAAATGCTGGTGTAGAAGAGGCCATGAATTGGTTACTATCCCACATGGATGATCCAGATATTGATGCTCCTATTTCAAAAGGGCAAGGCACTGAGACTGTTGACCAATCAAAAGTTGATACTCTAATTTCTTTTGGATTTCAAGAAGATGTTGCTCGAAAGGCACTGAAGGCATCGAATGGTGACATCGAGAAAGCAACAGATTGGATATTCAGCAACCCTGATGCAACAGTTTCTAGTATGGATGCTACCTCATCAAACAATGCATCTGTTCCAAATGGTGATGACTTACCTGATGGAGGAGGAAAATACCGACTTATTGGAATTGTTAGCCACATCGGAACCTCTACGCAGTGTGGTCACTATGTTGCTCACATCTTGAAAGATGGTAGATGGGTTATTTTTAACGACAACAAGGTTGGGGTATCCATTAACCCTCCAAAGGACATGGGGTATCTTTATTTCTTTGAGAGGCTTAGTGGTTGA 2529 0.4124 MMELDPMDLLRSNLSRVRIPEPTNRIYKQECCLSYQTPRSEGGLFIDMFNFLAFGKECVAWNFEKTGNPVYLHIKQTKKIVPEDRPSKKPTLLAIGVDGGFDNNDTEYEETRTIVILPDYVSLPFPSVELPEKVVVSLYFMIIALFIPLTCFCFEERLYAKDEFQVRLAADGILLAEGAERKEQVAAWTAADTKQVSAYAVNLHQIDNGVVIPPSGWKCSQCDKTENLWLNLTDGVILCGRRNWDGSGGNNHAVEYYKKTGYPLAVKLGTITADIESADVYSYPEDDSVLDPLLAEHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQVVEPIFGPGYTGLVNLGNSCYLAATMQVVFSTGSFSSRYYINQNLKKAFEAAPADPTVDLNMQLTKLAHGLLSGKYSTPASQNDDNASVASSTITDKQEGIPPRMFKAVIAASHPEFSSMRQQDALEYFLHFIDQVERANSGKTELDPSRSFKFGIEDRILCSSGKVAYNRRNDYILSLNIPLHEATNKEELESFHKLKAEKLSEGKEVSGDEIVRPRVPLEACLANFAAPEEIHDFYSTALKTKTTAVKTAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGHQPGEELLPDGVPEEDSDEPWVNEEIVSQLVSMGFNHIHCQKAVINTSNAGVEEAMNWLLSHMDDPDIDAPISKGQGTETVDQSKVDTLISFGFQEDVARKALKASNGDIEKATDWIFSNPDATVSSMDATSSNNASVPNGDDLPDGGGKYRLIGIVSHIGTSTQCGHYVAHILKDGRWVIFNDNKVGVSINPPKDMGYLYFFERLSG* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0096 842 Gene3D - 710 770 - -
Lan5g0096 842 SMART uba_6 657 695 IPR015940 -
Lan5g0096 842 SMART uba_6 716 753 IPR015940 -
Lan5g0096 842 Pfam Variant UBP zinc finger 17 79 IPR041432 -
Lan5g0096 842 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 348 363 IPR018200 GO:0004843|GO:0006511
Lan5g0096 842 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 141 - -
Lan5g0096 842 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 165 841 - -
Lan5g0096 842 SUPERFAMILY UBA-like 703 756 IPR009060 GO:0005515
Lan5g0096 842 SUPERFAMILY RING/U-box 197 305 - -
Lan5g0096 842 CDD Peptidase_C19B 348 838 - -
Lan5g0096 842 ProSiteProfiles Zinc finger UBP-type profile. 195 305 IPR001607 GO:0008270
Lan5g0096 842 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 714 754 IPR015940 -
Lan5g0096 842 MobiDBLite consensus disorder prediction 632 652 - -
Lan5g0096 842 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 785 803 IPR018200 GO:0004843|GO:0006511
Lan5g0096 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 115 IPR013083 -
Lan5g0096 842 CDD UBA2_atUBP14 718 755 - -
Lan5g0096 842 PIRSF UBP 7 144 IPR016652 GO:0004843|GO:0016579
Lan5g0096 842 PIRSF UBP 150 841 IPR016652 GO:0004843|GO:0016579
Lan5g0096 842 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 655 696 IPR015940 -
Lan5g0096 842 Pfam UBA/TS-N domain 657 693 IPR015940 -
Lan5g0096 842 Pfam UBA/TS-N domain 716 751 IPR015940 -
Lan5g0096 842 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 165 841 - -
Lan5g0096 842 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 141 - -
Lan5g0096 842 Pfam Zn-finger in ubiquitin-hydrolases and other protein 219 292 IPR001607 GO:0008270
Lan5g0096 842 Gene3D - 643 709 - -
Lan5g0096 842 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 347 840 IPR028889 -
Lan5g0096 842 Gene3D Cysteine proteinases 340 841 - -
Lan5g0096 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 292 IPR013083 -
Lan5g0096 842 SUPERFAMILY Cysteine proteinases 343 840 IPR038765 -
Lan5g0096 842 SMART Zf_UBP_1 218 273 IPR001607 GO:0008270
Lan5g0096 842 Pfam Ubiquitin carboxyl-terminal hydrolase 347 837 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0096 Lan-Chr5 1172555 1181642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0096 654 703 C2H2 Transcription Factor Family AT1G04850 38.000 8.16e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0096 K11836 - gmx:100805602 1362.05