Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0094 ATGGACAGAAATACCCCTACGGCAGCGAAATCGGTAGAGCCTGAAACCGAGACACCAACCCGGATCCAACAACCACTTAACAACACCGCCGCGGCGGTTAATATTAAACCTTTGTCGTTTTCCAACGGTGTTTTGAAGCGGCACCACCCTCACCACCACCACCACAACCTTGTTAGCCCCACCGCCACCGTGCCTGTGACGGCGGTTACTTATAAAGAATGCTTGAAGAATCATGCAGCCAGTTTAGGCGGCCACGCGGTCGACGGTTGCGGCGAGTTCATGACGTCACCGAACGTCACCGCCGGTGACCCAAGTTCAATAAAATGCGCCGCATGTGGCTGCCACCGTAACTTCCACCGTCGTGACCCAGAGGAGCCACCGATTCCCACCACCACAACCCATGTCATAGAATACCAACCTCACCACCGTCACCACCCTCCTCCTCCACCACCTTTCCAACAACCACCACCACTACCACTTTCCCGGAGCCCAAACTCCGTTTCTCCACCTCCAATCTCCTCCTCTTACTACCCATCAGCACCCCACATGCTCCTCGCTCTTTCCGGCGGTCTCTCAGTCCCTCCGGAGTCCACAGCCGCGCCGGCGAATCATGCTGCTGTAGCAGCTGCCATGGCTGCTGCTTCTGCTGCATCACCTCGGAAACGTTTTCGAACGAAGTTCAGTCAAGAACAGAAGGAGAAGATGCAAGAGTTTGCAGAACGTGTTGGGTGGAAGATGCAGAAAAGAGATGAAGATTTGGTTATGGAGTTTTGCAATGAGGTTGGTGTTGATAGAAGCGTTCTCAAAGTTTGGATGCATAACAATAAGAACACTTTTGGGAAAAAAGATGTTACTACTAATGCAACAAACGGTGTCGTTTTGGAACATGTTCACAACAATGTTAATGATAGTGTTAGTGGTGGTGATCAAGATCATAATAATAATAATAATGATAATAATAATAATAATAATAATAATCATGGTGCAAATGTTGTTTGTGGTACTAATGGGTCTTCTTCTTCTTGA 1026 0.4893 MDRNTPTAAKSVEPETETPTRIQQPLNNTAAAVNIKPLSFSNGVLKRHHPHHHHHNLVSPTATVPVTAVTYKECLKNHAASLGGHAVDGCGEFMTSPNVTAGDPSSIKCAACGCHRNFHRRDPEEPPIPTTTTHVIEYQPHHRHHPPPPPPFQQPPPLPLSRSPNSVSPPPISSSYYPSAPHMLLALSGGLSVPPESTAAPANHAAVAAAMAAASAASPRKRFRTKFSQEQKEKMQEFAERVGWKMQKRDEDLVMEFCNEVGVDRSVLKVWMHNNKNTFGKKDVTTNATNGVVLEHVHNNVNDSVSGGDQDHNNNNNDNNNNNNNNHGANVVCGTNGSSSS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0094 341 Gene3D - 206 280 - -
Lan5g0094 341 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 220 277 IPR006455 -
Lan5g0094 341 MobiDBLite consensus disorder prediction 300 341 - -
Lan5g0094 341 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 4 307 - -
Lan5g0094 341 SUPERFAMILY Homeodomain-like 215 281 IPR009057 -
Lan5g0094 341 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 70 122 IPR006456 -
Lan5g0094 341 MobiDBLite consensus disorder prediction 1 26 - -
Lan5g0094 341 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 307 - -
Lan5g0094 341 MobiDBLite consensus disorder prediction 139 173 - -
Lan5g0094 341 Pfam ZF-HD protein dimerisation region 69 123 IPR006456 -
Lan5g0094 341 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Lan5g0094 341 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0094 Lan-Chr5 1143044 1144405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0094 11 276 ZF-HD Transcription Factor Family AT5G15210 50.752 1.43e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lan5g0094 ZF-HD_dimer 4.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0094 - - jre:108985975 332.413