Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0093 ATGCATAACAAAGGTTTTGAAGAATTTGGTAACATGAGGAGGCGCCAAGTAGTAGTTAGAAGATCAGAAGAACAAGCTGCAAGAAATGTTAGGATTGTGAAATATGGAGAGTGCCAAAAGAATCATGCTGCTAATGTTGGAGGATATGCTGTAGATGGTTGTAGAGAGTTCATGGCAAGTGGTGGTGAAGGTACAATTTCTGCTCTAACTTGTGCTGCTTGTGGCTGCCACAGAAACTTCCACAAAAAAGAGGTTGAGACTGAAGCACTAAGTGAATTCTCTTCACAAACCTCCTCAGGGATTTGA 306 0.415 MHNKGFEEFGNMRRRQVVVRRSEEQAARNVRIVKYGECQKNHAANVGGYAVDGCREFMASGGEGTISALTCAACGCHRNFHKKEVETEALSEFSSQTSSGI* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0093 101 Pfam ZF-HD protein dimerisation region 33 85 IPR006456 -
Lan5g0093 101 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 35 84 IPR006456 -
Lan5g0093 101 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 34 85 IPR006456 -
Lan5g0093 101 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 95 - -
Lan5g0093 101 PANTHER BNAA09G44460D PROTEIN 17 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0093 Lan-Chr5 1119344 1120877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0093 12 100 Zinc finger-homeobox gene family AT3G28917 60.606 3.03e-37 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lan5g0093 ZF-HD_dimer 6.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0093 - - lang:109339447 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0093 5 1119344 1120877 Lan5g0093 5 1119344 1120877 ECH