Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0092 ATGGGAAGACTACCATGTTGTGATAAAGGTGTGAAAAAAGGACCTTGGACTCCTGAAGAAGATATCATTTTAGTGTCTTATATACAGGAACATGGTCCTGGAAATTGGAGGACTGTTCCTACCAATACTGGGTTGTGTAGGTGCAGTAAAAGTTGCAGACTTAGATGGACAAATTACCTAAGGCCAGGAATCAAGAGGGGTAACTTTACAAAACAAGAGGAAAAAATGATAATCCACCTTCAAGCTCTTTTAGGAAACAGATGGGCTGCTATAGCTTCATACCTTCCACATCGGACAGACAATGATATCAAGAACTATTGGAACACCTACTTGAAAAAGAGGCTTGAAAAATCGGAATCAGGATCTGAAGGAACCTTAGGGAATGTGTATAATTCAGCTTCAAATCCAGTAACTAAAGGCCAGTGGGAAAAAAGGCTCCAAACTGATATCAATATGGCCAAAAAAGCTCTCACTGAAGCTCTTTCACCAAAGAAGATGCTTTCATTACATGAACCAAATGATGATAGCATTTCTAATGATATTGGATCCATAAAATCAACTACTCCTAATTCTATATGCTATGCTTCAAGTGCTGATAACATTGCTCGTTTGTTAAAGGGGTGGATGAAGAATCCTCCAAATAAGGCCTCATCAAAATCTAACTCAATTGTGAGTACTCAAAATTCCTTCAACAACTTGGCTGGAATTGACACTGCTTCTAGTGAAGGAACACCAAGTGTTGGAGCAAAAGGAAGTGTTGAATTTTCTGAGACTTTTAAGTCCTTGTTTGGTTATGAATCTTTGGACTATTCTTCAAATTCTGAATTTTCTCCATCTTTGTCACATGAAGCTAGTACTCTTTGCCAAGATGAGAGAAAACCTGGTACTACAAGTATTGCAGAAATGCCTTTCTCTTTGCTTGAGAAATGGCTTTTAGATGATACTAAAATTGGTGCAGATGCCACTTTGTTTTAG 975 0.3805 MGRLPCCDKGVKKGPWTPEEDIILVSYIQEHGPGNWRTVPTNTGLCRCSKSCRLRWTNYLRPGIKRGNFTKQEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTYLKKRLEKSESGSEGTLGNVYNSASNPVTKGQWEKRLQTDINMAKKALTEALSPKKMLSLHEPNDDSISNDIGSIKSTTPNSICYASSADNIARLLKGWMKNPPNKASSKSNSIVSTQNSFNNLAGIDTASSEGTPSVGAKGSVEFSETFKSLFGYESLDYSSNSEFSPSLSHEASTLCQDERKPGTTSIAEMPFSLLEKWLLDDTKIGADATLF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0092 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Lan5g0092 324 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 317 - -
Lan5g0092 324 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lan5g0092 324 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Lan5g0092 324 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lan5g0092 324 CDD SANT 68 111 IPR001005 -
Lan5g0092 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 317 - -
Lan5g0092 324 CDD SANT 15 60 IPR001005 -
Lan5g0092 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Lan5g0092 324 Gene3D - 68 136 - -
Lan5g0092 324 SMART sant 12 62 IPR001005 -
Lan5g0092 324 SMART sant 65 113 IPR001005 -
Lan5g0092 324 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lan5g0092 324 Gene3D - 12 65 - -
Lan5g0092 324 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0092 Lan-Chr5 1093691 1095252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0092 1 314 MYB Transcription Factor Family AT5G62470 49.441 5.18e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan5g0092 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0092 K09422 - gmx:780542 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0092 5 1093691 1095252 Lan20g1257 20 18562192 18564159 LSH