Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0087 ATGTCTAGCAGAAGGTCCAGGCAACAATCATCAGGGTCAACTAGAATCTCTGATGACCAAATTATCGATCTTGTTTCAAAGTTGCGTCAACTTGTTCCTGAGATTCGTCATAGGCGTTCTGACAAGGTATCAGCATCAAAGGTCCTACAAGAAACCTGCAACTACATCAGAAACTTACACAGAGAGGTTGATGACTTAAGTGAAAGGCTTTCTCAGTTGTTGACCACTATTGATTCTGATAGTGCTGAGGCTTCTATCATTAGGAGCCTAATTAGCCAATAA 282 0.4113 MSSRRSRQQSSGSTRISDDQIIDLVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLTTIDSDSAEASIIRSLISQ* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0087 93 Gene3D - 1 89 IPR036638 GO:0046983
Lan5g0087 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 78 IPR036638 GO:0046983
Lan5g0087 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Lan5g0087 93 Pfam Helix-loop-helix DNA-binding domain 20 59 IPR011598 GO:0046983
Lan5g0087 93 Coils Coil 56 76 - -
Lan5g0087 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Lan5g0087 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Lan5g0087 93 CDD bHLH_AtPRE_like 15 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0087 Lan-Chr5 1037761 1039539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0087 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 75.000 8.65e-38 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan5g0087 HLH 4.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0087 - - csv:101221024 147.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0087 5 1037761 1039539 Lan5g0087 5 1037761 1039539 ECH
Lan5g0087 5 1037761 1039539 Lan8g0903 8 10737393 10739580 LSH
Lan5g0087 5 1037761 1039539 Lan20g1248 20 18313906 18315887 LSH
Lan5g0087 5 1037761 1039539 Lan8g0128 8 2052256 2057777 PCT
Lan8g0128 8 2052256 2057777 Lan5g0087 5 1037761 1039539 PCT