Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0085 ATGGCTTTTCCTAATTCTCACCCTTTCATGTTTCAAACAAATCATGAAGATCATCATCATCACCACTTTCATCAAGGTCTTTCACACTCTAACACATCTCTCATGATGAAGAGATCCATGTCATTTTCAGGAATAGAGAACAATCACTATGATGCAGTTCATGGTGATGATGAATTATCAGAAGATGGATCTCATATTGGAGAGAAGAAAAAGAGGTTGAAGTTGGAACAAGTGAAAGCACTTGAGAAGAGTTTTGAGATAGGGAACAAGCTTGAACCTGAAAGGAAAATGCAACTTGCTAAGGCTTTAGGTCTTCAACAAAGACAAGTTGCTATATGGTTTCAAAATAGAAGAGCAAGATGGAAAACTAAGCAACTTGAGAAGGAATATGAAGTGCTTAAGAAGCACTTTCAAGATCTTAAGCTTGATAATCATAACCTTAAGGCTCACAACCAGAAACTACATGGAGAGTTACAAGCTCTAAAGAATAGGGAATGCTTTGAAAGTGGTACAATTAGCCTCAAGAAAGAAACTGATCAAGGTTCTTGGAGCAATGCAAGTGATATTAGTTCAAATATCAATTTAGATCTATCACCAAAACCAATAATGAATAGTCCTATATATTCTCATAATGGTAAAACCCTTTTACACAATTCATCAAGATTAGAACTTCAAGAAGAAAGCTTCACCAACATGTTTCACAACATTGAGGATCAGCAGAATTTTTGGCCTTGGCCTGAGCAGAACCATTTTAATTGA 759 0.3584 MAFPNSHPFMFQTNHEDHHHHHFHQGLSHSNTSLMMKRSMSFSGIENNHYDAVHGDDELSEDGSHIGEKKKRLKLEQVKALEKSFEIGNKLEPERKMQLAKALGLQQRQVAIWFQNRRARWKTKQLEKEYEVLKKHFQDLKLDNHNLKAHNQKLHGELQALKNRECFESGTISLKKETDQGSWSNASDISSNINLDLSPKPIMNSPIYSHNGKTLLHNSSRLELQEESFTNMFHNIEDQQNFWPWPEQNHFN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0085 252 Gene3D - 61 131 - -
Lan5g0085 252 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Lan5g0085 252 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Lan5g0085 252 SMART HOX_1 67 128 IPR001356 GO:0003677
Lan5g0085 252 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Lan5g0085 252 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 21 249 - -
Lan5g0085 252 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Lan5g0085 252 Pfam Homeobox associated leucine zipper 124 164 IPR003106 GO:0006355|GO:0043565
Lan5g0085 252 Coils Coil 116 164 - -
Lan5g0085 252 CDD homeodomain 69 125 IPR001356 GO:0003677
Lan5g0085 252 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 21 249 IPR045224 GO:0003700
Lan5g0085 252 SUPERFAMILY Homeodomain-like 53 126 IPR009057 -
Lan5g0085 252 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0085 Lan-Chr5 1013669 1016806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0085 1 245 Homeobox Transcription Factor Family AT3G01220 47.368 1.45e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan5g0085 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0085 K09338 - gmx:100816097 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0085 5 1013669 1016806 Lan5g0085 5 1013669 1016806 ECH
Lan5g0085 5 1013669 1016806 Lan20g1242 20 18196151 18199389 LSH