Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0083 ATGGCGGACGGTCATCAATTTAACAACATCACCCTTGGTGGCCGCGGCGGCACCAATACAGGACAGATGAAAATATATTCAGAAGGCATTTTATGGAGGAGACAAGGGGGTGGCAAATTGATCGAAGTTGATAAATCTGACATAATGGGCGTAACATGGATGAAGGTTCCAAGGACCAATCAACTTGGTGTTCAGATTAAAGACGGGTTGTTCTACAAGTTCACCGGATTCCGTGACCAGGATGTTGCAAGTTTGACAACTTTTTTCCAAAATACGTTTGGAATAATAGTAGAAGAGAAGCAGCTTTCTGTTACTGGGCGTAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAAGTGTCCCTAGCAGATGTTGCTCAAACACAGCTTCAAGGAAAAAATGACGTGATTTTGGAGTTTCATGTGGATGACACAACTGGAGCTAATGAGAAAGATTCATTGATGGAGATGAGTTTCCACATACCAAATTCCAACACCCAGTTTATTGGTGATGAAAATCACCCCCCTGCTCAGGTTTTCCGTGACCAAATCATGTCTAGGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTCGTTACATTTGAGGGTATTGCAATCCTTACACCAAGAGGACGATACAGTGTTGAGTTACATTTGTCTTTCTTGCGGCTTCAAGGACAGGCTAATGATTTCAAAATACAATACAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAGCCGCACACCTTTGTTATTATCAGTCTTGACCCCCCTATTCGGAAAGGGCAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTTAGTTGTGCAAAGTGAATTGTCAATGGGTGAAGATCTCTATAATACCAAGTACAAGGACAAGTTGGACATGTCTTATAAGGGACTTATCCATGAAGTCTTCACTACAATATTGCGAGGATTATCTGGTGCTAAAGTTACCAAACCTGGAAAATTTAGGAGTTGCCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTATATCCTCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCTACCCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTGGTCAGACTAAAATCTGAGACAGAACATCTCTTCCGTAATATTCAGAGAAATGAATACCACAATTTATATGGTTTTATCAGTTCAAAGGGCTTGAAAATTATGAACTTAGGAGATGCCCAGGCCCCTGGTGGTATGGCTAAGGTTCTTGAGACTGATGATGATGATGCTGTTGATCCACATCTTGAGCGGATTAAAAATGAAGCTGGTGGTGGAGATGAGAGTGATGAGGAGGATGAAGATTTTGTTCTTGATAAGGATGATGGAGGTTCTCCAACTGATGATTCTGGAGGAGAAGATTCTGATGGTAGTCAAAGTGGTAGTGATGATGAGAAAGAGAAGCCCGCTAAAAAGGAACCAAAGAAGGATCTATCTTCTAAGGCATCTACTTCTAAGAGGAAACCAAAAGAAGCGGAAGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAAGACCCAAATGCACCCAAGAGGGCATTGTCTGGTTTCATGTTCTTTTCTCAAATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCGTTTACCGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGCGGAAGAGAAGGAACCATACGAAGCAAAAGCCCGTGCAGATAAAATACGTTACAAGGATGAGATTAGTGGTTACAACAAGACTCCACAACCCACGAATGTTGATTCGGGAAATGAATCCGACAGTTCGTAA 1938 0.4097 MADGHQFNNITLGGRGGTNTGQMKIYSEGILWRRQGGGKLIEVDKSDIMGVTWMKVPRTNQLGVQIKDGLFYKFTGFRDQDVASLTTFFQNTFGIIVEEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVAQTQLQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPNSNTQFIGDENHPPAQVFRDQIMSRADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDLVVQSELSMGEDLYNTKYKDKLDMSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLVRLKSETEHLFRNIQRNEYHNLYGFISSKGLKIMNLGDAQAPGGMAKVLETDDDDAVDPHLERIKNEAGGGDESDEEDEDFVLDKDDGGSPTDDSGGEDSDGSQSGSDDEKEKPAKKEPKKDLSSKASTSKRKPKEAEEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKARADKIRYKDEISGYNKTPQPTNVDSGNESDSS* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0083 645 Gene3D - 1 93 IPR011993 -
Lan5g0083 645 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 643 - -
Lan5g0083 645 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Lan5g0083 645 Gene3D - 199 338 - -
Lan5g0083 645 SMART hmgende2 559 629 IPR009071 -
Lan5g0083 645 SUPERFAMILY HMG-box 551 635 IPR036910 -
Lan5g0083 645 SUPERFAMILY PH domain-like 206 440 - -
Lan5g0083 645 MobiDBLite consensus disorder prediction 627 645 - -
Lan5g0083 645 CDD HMGB-UBF_HMG-box 560 625 - -
Lan5g0083 645 Pfam POB3-like N-terminal PH domain 6 98 IPR035417 -
Lan5g0083 645 MobiDBLite consensus disorder prediction 470 568 - -
Lan5g0083 645 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Lan5g0083 645 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Lan5g0083 645 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Lan5g0083 645 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Lan5g0083 645 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Lan5g0083 645 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Lan5g0083 645 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Lan5g0083 645 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Lan5g0083 645 Pfam HMG (high mobility group) box 560 628 IPR009071 -
Lan5g0083 645 Gene3D - 96 179 IPR038167 -
Lan5g0083 645 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Lan5g0083 645 MobiDBLite consensus disorder prediction 620 645 - -
Lan5g0083 645 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 643 - -
Lan5g0083 645 Gene3D - 339 447 IPR011993 -
Lan5g0083 645 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 560 628 IPR009071 -
Lan5g0083 645 Gene3D High mobility group box domain 543 642 IPR036910 -
Lan5g0083 645 CDD PH2_SSRP1-like 342 441 - -
Lan5g0083 645 MobiDBLite consensus disorder prediction 509 551 - -
Lan5g0083 645 CDD PH1_SSRP1-like 207 340 - -
Lan5g0083 645 SMART Rtt106_2 348 441 IPR013719 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0083 Lan-Chr5 979596 985805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0083 556 627 ARID Transcription Factor Family AT1G04880 40.278 1.40e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan5g0083 POB3_N 3.3e-23 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0083 K09272 - gmx:100805034 1070.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0083 5 979596 985805 Lan5g0083 5 979596 985805 ECH
Lan5g0083 5 979596 985805 Lan20g1235 20 18065247 18071340 LSH