Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0071 ATGGCAAATCAACCTGAGTCTTCAGATTCTAAGAAAAAGGATTTCAGCACTGCGATCTTGGAGCGTAAGAAAGCGCCGAATCGTCTCGTCGTCGATGAGGCCGTTAACGATGACAACTCCGTCGTCGCACTTCACCCTGAAACCATGGAGAAGCTTCAGCTCTTTCGCGGTGACACGATTTTGATCAAGGGAAAGAAAAGGAAAGACACTGTCTGTATTGCACTTGCTGATGACACATGTGAGGAGCCAAAGATAAGAATGAACAAGGTTGTGAGAAACAACCTTAGGGTCAGGCTGGGAGATGTTGTCTCTGTTCATCAATGTCCTGATGTCAAATATGGAAAGCAAGTTCACATTCTTCCTGTTGATGACACTATTGAAGGGGTTACTGGGAATCTGTTTGATGCCTACCTAAAACCGTATTTCCTGGAGGCATATCGTCCAGTGAGGAAGGGTGACTTTTTCCTTGTAAGGGGAGGGATGAGAAGTGTAGAATTCAAGGTTATTGAGACCGACCCTGGTGAGTTTTGTGTTGTTGCTCCTGACACTGAGATCTACTGTGAAGGAGAGCCTATTAAGAGGGAAGATGAAAATCGACTAGATGAGATTGGTTATGATGATGTTGGTGGTGTAAGAAAGCAGATGGCACAGATTCGGGAGCTGGTTGAACTGCCATTGAGGCATCCACAATTGTTCAAGTCTATTGGTGTCAAGCCACCAAAAGGAATTCTGCTCTATGGACCCCCGGGGTCCGGTAAGACTTTAATTGCCCGTGCAGTTGCAAATGAAACCGGTGCCTTCTTTTTCTGCATCAATGGCCCTGAAATCATGTCAAAACTGGCTGGTGAAAGTGAAAGCAATTTAAGGAAAGCATTTGAGGAAGCTGAGAAGAATGCACCTTCCATCATCTTCATTGATGAGATAGATTCAATAGCTCCAAAACGGGAGAAGACTCATGGTGAAGTTGAGAGGAGAATTGTTTCTCAGCTCCTGACCCTCATGGATGGACTTAAATCCCGTGCACATGTTATTGTTATGGGAGCTACAAATCGTCCCAATAGCATTGATCCTGCTCTTAGAAGGTTTGGAAGGTTTGATCGGGAGATAGATATTGGTGTTCCAGATGAAGTTGGGCGTCTTGAGGTTCTTCGGATCCATACAAAGAATATGAAGCTTTCTGAAGAAGTTGATTTAGAAAAGATTTCTAAGAACACCCATGGCTATGTTGGTGCTGATTTAGCTGCTTTATGTACTGAAGCTGCACTTCAGTGCATCAGAGAGAAAATGGACGTAATTGATTTGGAAGATGATACCATTGATGCTGAGATACTGAACTCAATGGCGGTGACAAATGAGCATTTCCAGACTGCTCTTGGGTCAAGTAATCCTTCTGCTCTCCGAGAAACAGTTGTTGAAGTGCCAAATGTCAGCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGAGAACTTCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAGAAATTTGAGAAGTTTGGAATGTCACCTTCAAAGGGGGTCCTTTTCTATGGTCCTCCTGGTTGTGGTAAAACCCTTCTGGCAAAAGCTATTGCCAACGAATGTCAGGCAAACTTCATCAGTATCAAAGGTCCTGAGCTACTTACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAGGCTCGTGGTTCTGCTCCATGCGTCCTATTTTTTGATGAACTTGACTCTATTGCAACCCAGAGAGGCAGTAGTACAGGAGATGCTGGTGGTGCTGCTGATCGGGTTTTGAACCAGCTGCTTACGGAAATGGATGGGATGTCAGCAAAGAAAACTGTTTTCATCATTGGGGCCACTAATCGACCAGACATCATCGATCCTGCTCTTCTGCGACCAGGCCGTCTAGACCAATTGATTTATATCCCCCTTCCGGACGAAGAGTCCCGCTTTCAGATCTTCAAATCTTGCTTGAGAAAATCCCCCATTGCAAAAGATGTTGACCTTAGAGCTCTGGCTAAGTATACTCAAGGATTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCGTGCAAGTATGCTATAAGGGAGAACATTGAGAAGGATATCGAAAAAGAAAGGAGGAGAAGTGACAACCCTGAGGCCATGGAAGAGGATATCGAAGATGAAGATGTAGCAGAAATCAAGGCAGCTCATTTTGAAGAATCAATGAAGTTTGCCCGGAGGAGTGTGAGCGATGCCGACATTCGCAAATATCAGGCATTTGCTCAGACATTGCAGCAGTCAAGAGGGTTTGGATCTGAGTTCAGGTTTGCAGATAATGCCAGCTCTGGTGCTGCTGCTACTGCTGCTGCATCTGACCCCTTTGCAAGTGCTGGTGGAGCCGATGATGATGATCTTTATAGTTAG 2427 0.4475 MANQPESSDSKKKDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPETMEKLQLFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKQVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETDPGEFCVVAPDTEIYCEGEPIKREDENRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEEVDLEKISKNTHGYVGADLAALCTEAALQCIREKMDVIDLEDDTIDAEILNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRFQIFKSCLRKSPIAKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERRRSDNPEAMEEDIEDEDVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADNASSGAAATAAASDPFASAGGADDDDLYS* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0071 808 SMART AAA_5 239 375 IPR003593 -
Lan5g0071 808 SMART AAA_5 512 651 IPR003593 -
Lan5g0071 808 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 7 780 - -
Lan5g0071 808 Gene3D - 466 649 IPR027417 -
Lan5g0071 808 Gene3D - 6 110 - -
Lan5g0071 808 CDD AAA 209 372 - -
Lan5g0071 808 ProSitePatterns AAA-protein family signature. 343 361 IPR003960 GO:0005524|GO:0016887
Lan5g0071 808 SMART CDC48_2_2 128 194 IPR004201 -
Lan5g0071 808 Pfam AAA+ lid domain 671 711 IPR041569 -
Lan5g0071 808 Pfam AAA+ lid domain 396 436 IPR041569 -
Lan5g0071 808 Pfam ATPase family associated with various cellular activities (AAA) 516 649 IPR003959 GO:0005524|GO:0016887
Lan5g0071 808 Pfam ATPase family associated with various cellular activities (AAA) 243 372 IPR003959 GO:0005524|GO:0016887
Lan5g0071 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 464 IPR027417 -
Lan5g0071 808 CDD AAA 482 649 - -
Lan5g0071 808 ProSitePatterns AAA-protein family signature. 619 637 IPR003960 GO:0005524|GO:0016887
Lan5g0071 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 763 IPR027417 -
Lan5g0071 808 SMART CDC48_N_2 28 111 IPR003338 -
Lan5g0071 808 SUPERFAMILY Cdc48 domain 2-like 110 202 IPR029067 -
Lan5g0071 808 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 29 766 IPR005938 GO:0016787
Lan5g0071 808 Gene3D - 208 372 IPR027417 -
Lan5g0071 808 SUPERFAMILY ADC-like 25 108 IPR009010 -
Lan5g0071 808 Gene3D - 374 465 - -
Lan5g0071 808 Pfam Cell division protein 48 (CDC48), N-terminal domain 28 109 IPR003338 -
Lan5g0071 808 PANTHER AAA-FAMILY ATPASE 7 780 - -
Lan5g0071 808 Pfam Cell division protein 48 (CDC48), domain 2 130 193 IPR004201 -
Lan5g0071 808 Gene3D - 653 762 - -
Lan5g0071 808 MobiDBLite consensus disorder prediction 788 808 - -
Lan5g0071 808 Gene3D - 111 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0071 Lan-Chr5 869188 874071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0071 445 776 Calmodulin-binding Proteins AT3G56690 42.470 1.58e-79 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0071 K13525 - gmx:100791603 1470.29