Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0067 ATGGATGGTGAAATTTTGGAGAATGTTTCAGGAGAAGTTGAATTTAACAAGGTTGAATTTACATACCCATCAAGACCAGATAGCATTATATTGAATGATATGTGCTTAAAAGTTCCATCAGGTAAAACATTGGCCTTAGTTGGTGGAAGTGGATCAGGAAAATCTACTGTTGTGGCACTTTTGCAAAGGTTTTATGACCCAATTGGTGGAGAAATAAGGCTTGATGGTGTTGCTATTCATAAGTTACAACTCAAATGGTTAAGGTCTCAAATGGGTTTGGTTAGTCAAGAACCAGCTTTATTTGCAACAAGTATTAAGGAGAATATTCTTTTTGGAAGAGAAGATGCTTCTGAGAATGAGGTTGTGGAATCTGCTAAAGATTCTAATGCTCATGATTTTATATCTCAATTGCCTCATGGATACAATACACAAGTTGGAGAAAGAGGAGTTCAAATGTCAGGTGGACAAAAACAAAGGATAGCTATTGCAAGAGCAATTATAAAAAAGCCAAGAATTCTTCTCTTAGATGAAGCAACAAGTGCACTTGATTCAGAATCTGAAAGAGTTGTTCAAGAAGCTCTAGACAAAGCTTCATTAGGAAGAACAACAATCATCATAGCTCATAGATTATCTACAATTAGAAATGCTGATATTATTGCTGTTGTGAAAAATGGAAAAATCATGGAAATGGGGTCACATAATGAACTTATACAAAATCAACATGGTCTTTATACTTCACTAGTTCATCTACAACAAACAGAGAAAACAAATGGTGACCAAGAAGATAATAATTCATCTATATTGTCAAATAGAGACAACATTCAAAACACTAGTAGCAGAAGAATTTCGACTGCGAGTCGTTCTAGTAGCGTGATTTCAGCGGCTCCTGCTTCGGTTAATGATGGTGATCATGAAGTTGAAAATGTTGTGGAAGATGAGAAGTTACATGTTCCTTCATTTTGGAGGTTGTTGGCATTGAATTCACCTGAGTGGAAACAAGCATGTTTGGGATGTTTGAATGCATTGTTTTTTGGTGCTGTTCAGCCTAGTTATGCATTTGCATTGGGGTCCATGATATCTGTTTATTTTCTTACAGATCATGATGAGATCAAAAGGAAAACAATGATATATTCTCTATGCTTTTTGGGATTGGCTTTGTTTTCTTTGGTGGTTAATATCTTACAGCATTATAGTTTTGCTTACATGGGTGAATACTTGACCAAAAGGGTCAGAGAGAGAATGTTTTCTAAGATTCTCACTTTTGAAGTTGGGTGGTTTGATCAGGATGAGAATTCCACTGGAGCTATTTGCTCTAGACTTGCCAGAGATGCCAATGTGGTAAGGTCATTAGTTGGAGACAGAATGGCTCTACTGATTCAAACCATCTCAGCAGTGGTTATAGCCTGCACAATGGGCTTGGTCATTGCATGGAAACTAGCCATTGTTATGATAGCAGTTCAGCCCATTATCATAGCATGTTTCTACACAAGGCGTGTCCTTCTAAAAAGCTTGTCTCAAAAAGCCATAATGGCCCAAGATGAAAGTAGTAAGCTAGCTGCAGAAGCTGTTTCAAATCTTAGAACCATAACTGCATTTTCCTCACAAGATAGAATCATCAAGATGTTAGAAAAATCACAAGAAAACCCAAGAAGAGAGAGCATTAGACAATCATGGTTTGCAGGGCTTGGGCTTGCATGTTCACAAAGCCTGACATCATGTACTTGGGCCTTGGATTTTTGGTATGGTGCTAAGCTTATCTCACATGGGTATATCACAAGTAAGCAACTTTTTGAGACATTCATGATATTGATAAGCACTGGTAGGGTTATTGCTGATGCTGGTAGCATGACTAGTGACCTTGCTAAAGGTGCAGATGCTGTGGCCTCAGTTTTTGCAGTCCTAGATAGGGACACAAAAATTGAGCCTGATGAGACAGAAGGTTACAAGCCAGAAAAGTTAACAGGACAAATAGAACTAAGTGATGTCCATTTTGCATATCCAGCTAGGCCTAATGTAATGATCTTCCAAGGCTTCTCAATCAAAATTGATGCTGAACAATCAACTGCATTAGTAGGCCAAAGTGGTTCTGGCAAGTCAACAATAATAGCCTTAATAGATAGATTCTATGATCCACTCAAAGGGACAATAACAATAGATGGTAGAGACATAAAGTCCTATAATCTAAGATCACTTAGGAACCACATTGCACTAGTAAGTCAAGAACCAACATTATTTGGTGGAACCATAAGAGAAAACATTGCATATGGAGCTTATGATAATAATAACAATAATAATAAGAGTAATGAAGCTGAGATTATAGAAGCAGCAAAAGCATCAAATGCACATGAATTCATTGCAAGTTTGAAAGAAGGTTATGACACATTTTGTGGTGATAAAGGGGTGCAACTTTCAGGGGGTCAAAAGCAAAGAATAGCTATAGCAAGAGCCATATTGAAGAACCCTGAAGTGTTGCTTTTGGATGAAGCTACAAGTGCACTTGATAGTGAATCTGAGAAGCTTGTACAAGATGCACTAGAGAGGGTTATGGTTGGAAGGACTAGTGTAGTTGTGGCTCATAGATTGAGTACTATACAAAATTGTGATGTTATTGCTGTGTTGGGTAAAGGGAAAGTTGTGGAGAAAGGGACACATTCTTCTTTGTTGGGTAAGGGACCAAGTGGAGCTTATTACTCTTTGGTAAGTCTTCAAAGAAGACCATCAAACTAA 2727 0.377 MDGEILENVSGEVEFNKVEFTYPSRPDSIILNDMCLKVPSGKTLALVGGSGSGKSTVVALLQRFYDPIGGEIRLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDASENEVVESAKDSNAHDFISQLPHGYNTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKASLGRTTIIIAHRLSTIRNADIIAVVKNGKIMEMGSHNELIQNQHGLYTSLVHLQQTEKTNGDQEDNNSSILSNRDNIQNTSSRRISTASRSSSVISAAPASVNDGDHEVENVVEDEKLHVPSFWRLLALNSPEWKQACLGCLNALFFGAVQPSYAFALGSMISVYFLTDHDEIKRKTMIYSLCFLGLALFSLVVNILQHYSFAYMGEYLTKRVRERMFSKILTFEVGWFDQDENSTGAICSRLARDANVVRSLVGDRMALLIQTISAVVIACTMGLVIAWKLAIVMIAVQPIIIACFYTRRVLLKSLSQKAIMAQDESSKLAAEAVSNLRTITAFSSQDRIIKMLEKSQENPRRESIRQSWFAGLGLACSQSLTSCTWALDFWYGAKLISHGYITSKQLFETFMILISTGRVIADAGSMTSDLAKGADAVASVFAVLDRDTKIEPDETEGYKPEKLTGQIELSDVHFAYPARPNVMIFQGFSIKIDAEQSTALVGQSGSGKSTIIALIDRFYDPLKGTITIDGRDIKSYNLRSLRNHIALVSQEPTLFGGTIRENIAYGAYDNNNNNNKSNEAEIIEAAKASNAHEFIASLKEGYDTFCGDKGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSESEKLVQDALERVMVGRTSVVVAHRLSTIQNCDVIAVLGKGKVVEKGTHSSLLGKGPSGAYYSLVSLQRRPSN* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0067 908 Pfam ABC transporter transmembrane region 336 605 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan5g0067 908 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 2 905 IPR039421 -
Lan5g0067 908 MobiDBLite consensus disorder prediction 253 296 - -
Lan5g0067 908 SMART AAA_5 684 863 IPR003593 -
Lan5g0067 908 SMART AAA_5 40 226 IPR003593 -
Lan5g0067 908 Pfam ABC transporter 676 831 IPR003439 GO:0005524
Lan5g0067 908 Pfam ABC transporter 31 180 IPR003439 GO:0005524
Lan5g0067 908 ProSitePatterns ABC transporters family signature. 803 817 IPR017871 GO:0005524
Lan5g0067 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 251 IPR027417 -
Lan5g0067 908 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 657 900 IPR003439 GO:0005524
Lan5g0067 908 SUPERFAMILY ABC transporter transmembrane region 321 641 IPR036640 GO:0005524|GO:0016021
Lan5g0067 908 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 13 249 IPR003439 GO:0005524
Lan5g0067 908 ProSitePatterns ABC transporters family signature. 152 166 IPR017871 GO:0005524
Lan5g0067 908 CDD ABC_6TM_Pgp_ABCB1_D2_like 324 640 - -
Lan5g0067 908 CDD ABC_MTABC3_MDL1_MDL2 657 903 - -
Lan5g0067 908 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 341 622 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan5g0067 908 MobiDBLite consensus disorder prediction 253 297 - -
Lan5g0067 908 Gene3D - 647 907 IPR027417 -
Lan5g0067 908 Gene3D - 3 252 IPR027417 -
Lan5g0067 908 CDD ABC_MTABC3_MDL1_MDL2 13 251 - -
Lan5g0067 908 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 2 905 - -
Lan5g0067 908 Gene3D ABC transporter type 1, transmembrane domain 2 262 IPR036640 GO:0005524|GO:0016021
Lan5g0067 908 Gene3D ABC transporter type 1, transmembrane domain 309 636 IPR036640 GO:0005524|GO:0016021
Lan5g0067 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 648 903 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0067 Lan-Chr5 798437 803274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0067 6 904 Calmodulin-binding Proteins AT2G36910 47.859 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0067 K05658 - gmx:100807709 1414.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0067 5 798437 803274 Lan20g1224 20 17848412 17858056 LSH