Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0066 ATGAAAAGGGCAAGGGATGATGTTTATTCTGGCTCTCAATTCAAACGCCCCTTTGGTTCATCACGTGCTGCTGATTCCTATGGCCAAAATCAAATCCCTAGTGGAGGAGGCGGCGGCAGCGGCGGTGGTGTGGGTGGAGGAGGCGGAGGAGCAACTCCATCGCAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCAAGACCAAAGAGAAAAATATGACTTGTTTCTTGAGGTTATGAAAGATTTCAAGGCTCAAAGGATTGACACTGCTGGTGTCATAGCAAGAGTGAAGGAGCTATTCAAAGGGCATAATAATTTGATTTTTGGATTTAATACTTTCTTGCCAAAGGGATATGAGATAACACTTGATGAGGGTGATGCTCCTCCAAAGAAAACAGTTGAATTTGACGAAGCTATAACTTTTGTGAACAGGATAAAGAAACGATTCCAAAATGACGACCATGTTTACAAATCTTTCTTGGACATTTTGAATATGTACCGCAAAGAGCACAAGGACATTGGCGAGGTTTACAGTGAGGTTGCAACCCTTTTCAAGGACCACCGAGATTTACTCGATGAGTTCACTAGATTCTTACCAGATACTTCTGGAACACATTCTATGCCGCATACTCCATTTCCTCGAAATTCATTGCAGCGCTTTAGTGAGCGAAGTTCTTCAGCACCCATGATGCGGCCAATGCAAGTAGACAAGCAACGTTATCGACGAGATAGGCTTCTTTCTTCGCATGATCGTGATCTAAGTGTTGATCACACTGATCTTGATGATGACAAAACTATGATCATGCACAAGGAACAGAGGAAACGCGAGAGCAGGGATAGGAGAATTCGTGATCATGATGAGAGAGAAGCTGATCTTGATAACAACAGGGATTTGAACTCACAACGCTTTCCTGATAAAAGGAAATCTGTCAAAAAGGCTGAAGGTTGTGGATTGGCTTCTGACTTTGCTTCTCACGAGGACAAAGATTCCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTGCAGATGACTACCAAGCATTCTTGAAGTGCCTTCACATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAACATTCGGACCTTATGGATGAGTTCAATGATTTCCTGGAGCGTTGTGAGAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCGTTGTCTACTGATGCTCATGCATCAAGATCATCAAAGTTGGAGGACAAAGACAAAGAGAAGAAGCGTGAGGTCGATGGAGGTAAAGAGAAGGAAAGATACAGCAAATACATGGACAAATCCATTCAAGAGCTTGACCTTAATGACTGTGAAAGTTGTTCTCCCAGCTACCGGCGTCTTCCGGCAGATTATCCATTTCCTTCCGTCAGTCATAGATCTGAGCTCGCTGCTCAAGTGTTGAATGATCATTGGGTATCTGTGACATCAGGAAGTGAAGATTACTCTTTCAAGCATATGCGCAGGAATCAGTATGAAGAAAACCTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGCTATTAGAGTCTGTCAGTTCAGCTGCTAAACGTGCAGAGGAATTGTATAATAACATTGCTGAAAATAAGATCAATATGGAGAGTCTGAGCCGTGTTGAAGAACACTTTACCGCACTAAATGTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGATGTTGTAGACATTTTGCGTAAAAATCCAACTCATTCCCTGCCTGTAATAATTACCCGACTGAAGCAGAAACAGGAGGAGTGGACTAGGTGTCGTTCAGATTTCAATAAGGTCTGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCACCGTAGCTTCTACTTCAAGCAACAAGATTCGAAGAACTTGAGCACAAAATCTTTGGTGGCTGAGATCAAAGAAATTAAAGAGAAACAGCAGGAGGAGGATGATATTCTTCAGTCGATTTCTGCTGGAAATAAACAGCCTCTAATTCCACATCTCGAATTTGAATATTCTGATGCTGGGATTCATGAAGACCTGTATAAACTTGTTCGATATTCATGTGAGGAGGTCTTCTCTAGTAAGGAGTTGTTCAGTAAAATTATGAGACTCTGGGGTACCTTCTTGGAGCCAATGCTCGGTGTTCCTTCCCAATCTTATAGGACAGAAAATGTGGAGGACAGGAAAGAAAGCCACAATGTTTGTGATGGAAGTCCTCACGGAGACTCTATTTCAAGGTTACCAAAATTGAATAAGAATGAGGCTGATGGTAGGGTAATTGAAGTGAAGAATGCTCATCAGACTAGTTTAGCAGCTAATGGTAAAGAAAATGTATCTGTCGGTGGTGAACTGGTTTGTAAAGATGATCCAGTGATGGATAAAGGGCAGAAAAATGTAGACTGCAGTGTGAAAGTGTCTGGATTTAGTAAACCATTTGCATCTGATGAACAAGTTTCTAAAAACAATGCATCAATTGCAGTTAGAGAAGAAAATAGCCTGAGCAGAACCAATGCAGAATTAACTGCAGGCTGTGTTACTACTCCATCACGGGCTACTGATACTAATGACTCTGTGGCCAAGTGTCAGAGTGCTAATGCACCATCGATGGAGGGATGTGAGACTCCAGCTCTGGTTCCAGTAGTGAATGGGGTGCTAAACGAGAGCAGTGAAGTTAAAAGCCATGAAGAGTCTGCTGGGCCTAGCAAAATTGAAAAGGAAGAGGGTGAATTATCACCGAATGGTGATTCCGAGGAAGATAACTTTGTTGGTTATGGAGATTCAAATGCACAGTCAACGGTCAAGTCAAAGCACAATATCGAAATAAGGAAACATCATTCTAGAAATGGAGAGGACGAGAGTTGCCCTGACGCTGGAGGTGATAATGACGCAGATGCTGATGACGAGGACAGTGAGAATGTTTCTGAAGGTGGTGAAGATGCCTCAGGCAGTGAGTCTGCTGGTGATGAAGGCTCCCGTGAAGATCATGAGGAGGAGGAAGATATGGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGCGAAGCTGATGGAGATGCACAATCTGTTGGAGATGGTTTGTCATTGCCATTGTCCGAGAGGTTCCTTTCGTCAGTGAAACCTCTCACAAAGCATATATCAGCAGTTTCATTTGTTGAAGAAATGAAGGATACCAGAGTGTTTTATGGAAATGATGATTTTTATGCGCTTTTTAGGCTCCATCAAATTCTTTATGAAAGGATCTTATCAGCAAAAACATATTCAATGAGTGCAGAAACGAAACGGAAAACGAAGGATGCTAGTTCCCTAGATCCTTACTCAAGATTTATGAATGCTTTGTACAACTTGCTTGATGGATCTTCTGAGAATGCAAAGTTTGAAGATGAGTGCCGAGCAATTATTGGGAATCAGTCGTATGTGTTATTCACATTGGACAAGTTAATATATAAGATGGTCAGACAGCTTCAAACTGTCACAACCGATGAGGTAGACAGTAAACTTCTCCAATTGTACGAGTATGAGAAGTCTCGGAAACCCGGGAAATTAAATGATTCAGTTTATCATGCAAATGCACATGTCATCCTTAATGAGGAGAATATATATCGATTGCAATGTTCTTCTACTCCTTCTCGACTTTCCATCCAGATCATGGACAATATGAATGAAAAGCCTGAGATGTTTGCTGTATCTATTGATCCGGATTTTTCCTTTTATCTGCACAACGATTTTCTGTCTGCCTCTCCTTGCAAAAAGGAACCAAATGGCGTTATACTGCGAAGAAACAAACGCAAATATCGAGGCTTAGATGAGCACTCTGCAATTTGCTCTGCCATGGATGGTGTTAAAGTGATTAATGGATTGGAATGCAAGATAGCTTGCAACTCATCTAAGATTTCCTATGTTCTCGACACACAAGATTTTTTCTTCCGCCCCAGAAGGAAAAGAGGAACTTCATCAAGGGCGGCCTCCACCTCTACTACCCGACATAATCGGGAGGAAAGATATCGCAAATTGTTGGCGTTCCCGTAA 4125 0.4155 MKRARDDVYSGSQFKRPFGSSRAADSYGQNQIPSGGGGGSGGGVGGGGGGATPSQKLTTNDALSYLKEVKDMFQDQREKYDLFLEVMKDFKAQRIDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEGDAPPKKTVEFDEAITFVNRIKKRFQNDDHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLDEFTRFLPDTSGTHSMPHTPFPRNSLQRFSERSSSAPMMRPMQVDKQRYRRDRLLSSHDRDLSVDHTDLDDDKTMIMHKEQRKRESRDRRIRDHDEREADLDNNRDLNSQRFPDKRKSVKKAEGCGLASDFASHEDKDSLKSMYSQAFSFCEKVKEKLSSADDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHASRSSKLEDKDKEKKREVDGGKEKERYSKYMDKSIQELDLNDCESCSPSYRRLPADYPFPSVSHRSELAAQVLNDHWVSVTSGSEDYSFKHMRRNQYEENLFRCEDDRFELDMLLESVSSAAKRAEELYNNIAENKINMESLSRVEEHFTALNVRCIERLYGDHGLDVVDILRKNPTHSLPVIITRLKQKQEEWTRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQEEDDILQSISAGNKQPLIPHLEFEYSDAGIHEDLYKLVRYSCEEVFSSKELFSKIMRLWGTFLEPMLGVPSQSYRTENVEDRKESHNVCDGSPHGDSISRLPKLNKNEADGRVIEVKNAHQTSLAANGKENVSVGGELVCKDDPVMDKGQKNVDCSVKVSGFSKPFASDEQVSKNNASIAVREENSLSRTNAELTAGCVTTPSRATDTNDSVAKCQSANAPSMEGCETPALVPVVNGVLNESSEVKSHEESAGPSKIEKEEGELSPNGDSEEDNFVGYGDSNAQSTVKSKHNIEIRKHHSRNGEDESCPDAGGDNDADADDEDSENVSEGGEDASGSESAGDEGSREDHEEEEDMEHDDVDGKAESEGEADGDAQSVGDGLSLPLSERFLSSVKPLTKHISAVSFVEEMKDTRVFYGNDDFYALFRLHQILYERILSAKTYSMSAETKRKTKDASSLDPYSRFMNALYNLLDGSSENAKFEDECRAIIGNQSYVLFTLDKLIYKMVRQLQTVTTDEVDSKLLQLYEYEKSRKPGKLNDSVYHANAHVILNEENIYRLQCSSTPSRLSIQIMDNMNEKPEMFAVSIDPDFSFYLHNDFLSASPCKKEPNGVILRRNKRKYRGLDEHSAICSAMDGVKVINGLECKIACNSSKISYVLDTQDFFFRPRRKRGTSSRAASTSTTRHNREERYRKLLAFP* 1375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0066 1374 ProSiteProfiles PAH domain profile. 55 125 IPR003822 GO:0006355
Lan5g0066 1374 MobiDBLite consensus disorder prediction 429 452 - -
Lan5g0066 1374 SUPERFAMILY PAH2 domain 53 124 IPR036600 GO:0006355
Lan5g0066 1374 MobiDBLite consensus disorder prediction 14 36 - -
Lan5g0066 1374 MobiDBLite consensus disorder prediction 920 1058 - -
Lan5g0066 1374 Pfam Sin3 family co-repressor 474 565 IPR013194 -
Lan5g0066 1374 MobiDBLite consensus disorder prediction 1 56 - -
Lan5g0066 1374 Gene3D Paired amphipathic helix 337 410 IPR036600 GO:0006355
Lan5g0066 1374 SUPERFAMILY PAH2 domain 342 408 IPR036600 GO:0006355
Lan5g0066 1374 PANTHER SIN3B-RELATED 1 1353 IPR039774 GO:0003714
Lan5g0066 1374 Pfam C-terminal domain of Sin3a protein 1093 1340 IPR031693 -
Lan5g0066 1374 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1353 - -
Lan5g0066 1374 MobiDBLite consensus disorder prediction 431 452 - -
Lan5g0066 1374 SUPERFAMILY PAH2 domain 136 208 IPR036600 GO:0006355
Lan5g0066 1374 MobiDBLite consensus disorder prediction 987 1007 - -
Lan5g0066 1374 ProSiteProfiles PAH domain profile. 139 209 IPR003822 GO:0006355
Lan5g0066 1374 MobiDBLite consensus disorder prediction 208 236 - -
Lan5g0066 1374 MobiDBLite consensus disorder prediction 921 942 - -
Lan5g0066 1374 MobiDBLite consensus disorder prediction 208 248 - -
Lan5g0066 1374 MobiDBLite consensus disorder prediction 271 318 - -
Lan5g0066 1374 MobiDBLite consensus disorder prediction 1023 1038 - -
Lan5g0066 1374 Coils Coil 544 564 - -
Lan5g0066 1374 SMART hdac_interact2seq4b 471 571 IPR013194 -
Lan5g0066 1374 ProSiteProfiles PAH domain profile. 339 408 IPR003822 GO:0006355
Lan5g0066 1374 Pfam Paired amphipathic helix repeat 361 405 IPR003822 GO:0006355
Lan5g0066 1374 Pfam Paired amphipathic helix repeat 78 122 IPR003822 GO:0006355
Lan5g0066 1374 Pfam Paired amphipathic helix repeat 162 206 IPR003822 GO:0006355
Lan5g0066 1374 Gene3D Paired amphipathic helix 138 210 IPR036600 GO:0006355
Lan5g0066 1374 Gene3D Paired amphipathic helix 61 123 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0066 Lan-Chr5 783506 794528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0066 37 136 WRKY Transcription Factor Family AT4G12020 56.436 1.36e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan5g0066 Sin3a_C 6.4e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0066 K11644 - gmx:100807181 2078.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0066 5 783506 794528 Lan8g0882 8 10527470 10538346 LSH
Lan5g0066 5 783506 794528 Lan20g1222 20 17806101 17815975 LSH