Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0051 ATGATCATGGAACTCACCGATTCAATCGCCGCCGCCAACAACCACCCTCCTCCGCCGCTACAAGACTCTCACTCCGGTCTCGGAATCGATCTCAACGAGATCCCATCCCCTTCCACTTTCGAAACCCTACAAGAGACAATCGAAATCGTTCGCGCCTTTCACGACAACCCTGGCCCACCGCCGGAGGGCCCTGCGCTCCTCCCGCGAGGGTTAACTGTCTGCGCCGCGTGCGGGAAGCACGGATGCAGCGGTGTCCACGCCATTGTTTGTGATGGCTGCGACCGCGGCTTTCACGTGTCCTGCGTTGGCGTTCACGGCGATGGACGCCGCATCGATGAGTGGTTATGTGCTGACTGTGTTGCCGGTGGTGTGAAGAGTAAGCTGTGGCCGCTTGGGGTTAAGTCTAAGCAGCTTCTTGATATCAACGCGTCGCCGCCAAGAGAGGCTGATTGTCAAGAATTGCAGGATTTGAGAAAGCAAACTGTGGGTGCCAATCCATTTGGTGCCCCATTTGCACATTCAAATTTACACAATGGGAGTGCTTTTGGCTTCCAAAAAGCATCAGGAGTTGTGACACATGCTGTTAGAGTGGGTTTTGAGGATATAATCAATCATAACCAATCATTGACCAGAAGCTTTGAGAAGGGTCTAAGAGATTTTATATCTGAAAGGCATGGCGTGCTGGAGGAGGGCTGGGGAGTGGAATTTAGACAATCAGTGAGCGGCTCTGAAGCGTATGCAGTTTACTGTGCACCAGATGGGAAGGTATTTGATTCTTTGTATGAAGTAGCTTGTTATTTGGGGCTAACGTCCGGCTACAACTCTATGGAATGCGAAATAAGAAATGAAAGGTCAGGCAGTCCTCAACCATCCAGAAAAAGAAAATCAACAAAAATGGCAGTAGCTAATGGTTTTGCAGAAAAGTGGGGAACCTTTATCAATAGTTTTTGTAAGGATCCTCCTTCTAATGGGTTAAGTGTTGAATGTGCTACTATCGGAAAAGCTACTGAAGCTGAAATTAGAAGAAAAGAGGATGGTCACTCTAGCCCTGAGCAATCTTCTGATGGACTTCCTCTACAGTTCAAGGACTTCTTTGTTCTTTCTTTGGGAAAAGTTGACAGTAGACCTTCATATCAAGGTGTTAACCTTATCTGTCCTGTAGGTTATAAATCTGCTTGGCATGATATGATTACTGGCTCTCTTTTTACATGTGAAGTTTTGGAGGGTGGTGAGTCGGGACCTATATTTAGGATTAGAAGGTGTTCTTGTTCGAAATACCCCGTTCCAGTTGGGTCAACCATCCTTTCAATGTCAAGTCGTTGTCAACAATTTGTGAGTCAAACCAATAAAGAAGGTGAGAGAAGGACTAATGATGAAATGGATTATGATGTTGATGAAAGTATCCAGATGATTCTTTCAGACCCTTGCGTGCCAACAGAAAATGATGTCATCAGTTGTATAGAAAGTTGCTTGAATGAGACGCGTGATACTTTTACATCAGACATACCGCAGCTTGTTGCTGGTTCAGTTCAAGATAAAACTAGAATTTCATTAGCTGATGACTCAGGGTCAGTGGATGGAATCAGTGAAATTTTGGTGGAAGATCGGTCGTCATCCTCAGCATGGGAAGTTATGTCTCAAAAGTTGGTCAATGCCTGCAAGGATATCTGCAAGCAGAAAGGAACTCTTAAGTTCTATTGTAAACATGTTGAAAATGAAGCATGCTTACATGAATGTGATACAAGGAATGGAAAAAGTCATTCACACTTTTCTTCATTGGATAAATTTTGTGCTTCAATTGGTTCGGTTAGCATACCAGATGTAGTTCATACAGAAAATGATCTGGATAGTTTCTCTGAGGTCTTAGTAAAATGGTTGGGGCAAGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTAGAAAAGCTTCCTGGTGTCCAAGATTCTTTGCAGTATGAACTTCTAAACAGTAGAAATGATAACTCTTCATTTCCAACAGTTGAGAATTGTTTTCTAGTGGTTGAACGGAGAGGTGGATCACAATATCAAGAAGAAGAAGTTCAAGGTTTATATAGGAAGTCCAAGAAAGCAAGATTGATTGAAAAATGTGTTGAGGAAGATCGTTGTCCACCACCTCCTGGGAAGCCACTGTGCTCTAGGGTTCCTAATGAATATATTGGGGACATTTTCCAGGCTTGGGAACTTATAGAGCGCTTTCATGAAATTCTGGACTTGAAAGAACCATTGTCCTTAGATGAGCTAGAGAAGGAACTTATCTACCCATGGTTTGATGGATTGGATTTTCTTGAGAAATCTGAGAGGGAAACAAATGGCAGTCAAGTTTTAAATTTGCCAGGCGATGATAGTAATTGTGGATCCCCAAGGTGTGAAGTTGGTCCATCAGGTTCGATAGAAAGTTCCCATGCGTTTATTCAAGTTGATACAGAAGCAATGAAAGAGGCTGCTCAAGTTAAACTTGCATCTTTTACTTATGCAAGATGCTTTGGTGTTGCTTTGACCAAGGCACATAATTCCTTGCTGAAAGTGCTTATAAGTGAACTGCAATCCAATGTGGCTGCACTCGTAGATCCAAGTTTTGAACCTGCAGAAACACGAAGTAGACGGGGAAGAAGGAAGGATATAGATAGTGCAGCTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTAATAATGAGTTGACTTGGCCAGAATTAGCCCGTAGATACATCTTGGCTGTCTTATCAATGGACGGTAACCTGGACTCTGCAGAAACTATTGCACGCGAGAGTGGTAAAGTATTTCGTTGCTTGCGAGGTGATGGTGGATTGCTGTGTGGTTCCCTTTCTGGCGTGGCTGGGATGGAAGCAGATGCACAGTTGCTTGCAGATGCTACAAAGAAAATTTTTGGTTCTTTGAGCAAATTCAATGATGTAATAACCATTGAAGAAGTGGACTCTGAGGTGAAGGATGCTTCTGAAAATCTTGTGGATGGTGATGGCAGTATTCCTGAATGGGCAAAGGAACTAGAACCTGCTAGAAAACTACCAACAAATGTTGGTACCCGAATCAGAAAGTGCATTTATAATGCTCTGGAGAAGAATCCACCAGAGTGGGCGAAGAAAATTCTGGAACATTCAATTAGCAAGGAAGTATACAAGGGCAACGCATCTGGGCCAACAAAGAAAGCAGTTCTTTCAGTGTTGACTACTGTATCTGGTGGAGGATTGCCAGAGAAGCCACCCAAGAAAGGAAAGAAAACAAAGACTGAAATATCTATTTCTGATATTGTCATGAAACAATGTCGCATTGTATTACGTCGTGCAGCTGCCACAGATGATTCAAAGGTTTTTTGCAATTTGCTAGGAAGAAAGTTAATTAACTCGTCAGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCTATGGTGGCCCGTCCTCTTGACTTCCGGACTATTGACCTAAGATTGGCTGCTGGAGCTTATGGTGGATCTCATGAAGCTTTTGTTGAGGATGTTCGTGAGCTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTAGTTGAACTAGCTGAAAATTTGTCCCATAACTTCGAATCGTTGTATAATGAGGAGGTTGTTGCTTACGCCCAAAAATTTGTGGAGTATGCTAAACTGGGATGCTTAAGTGCAGAAATGAGAAAAGAAGTTGACGATTTTATTGCATCAATAAGAGAGATTCCTAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGTGTTGATAGGGATGATGATAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTAAATCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGCCCTTCTTGTGTTGATGGTAAACGTGCAATTCAAGATGTCACAGAACGTACACATATTATTTGCAAACGTAGAAAGAAAAGATTCCGTGGAGAAGTTAGTTCTCTTTACTTGGAAGCCCTAACTCATTTATCAACTGTAATGGAAGAAAAAGAATACTGGGATTACAGTGTGGGCGAGAGAACTTTCCTTCTCAAGTTTTTATGTGATGAGTTGCTTAACTCTTCCCTGGTACGTCAGCACCTTGAGCAATGTGCAGAGTTCTCTGTTGAGTTACAGCAGAAACTGCGTGCATTTTCTGTTGAGTGGAAAGGTCTGAAAGCTAAAGAAGACATCTTATCCACAAAATCTGCAAAAATTGATGTATGTTCGCTTAATACTGCTGGAGAAGTTGTTCATAAGGAAGGTTTCACTGCTACACTTATATCTGTGGCAAACTCTGATACTGATAGCCAAAATATGAAGTCCGTAGATGCTGGGCGGCAACATAGGAGTATCTCTGCGGCAGTGGAGTCTCAATGTACTCACATGGCTCGAGAAATGAACAGCGCTGGGGGAGCAGATCATCCTAACCACCAGAAATGTGAGGGAAGGGACATATCTACTCTTGTGACATCCCAGCAAGGACATTGTGTGCCTGTTGATGCTTCTCAGATTGCTGCGAATGAAGCCAAACCTTACCATGTTGAGCTCAATGCAACCAAGCGTGAAATTTCAACACTACAGGACTCCATAACTAATGTACAATCACAGCTACTGAAGCTCTCTGTTCGCCTGGAATTTTTGGGTACTGATTCCATTGGTCGACTGTACTGGGCTTCAACTATGCCCAGAGGACGTTCATGTATAGTTGCCGATGCAAGTGATGCATTGTTGCACAGGAGAGGAATGACGGTCAACAGAGACTCTGTGGACAAGTTTTCTTTTATGCAGCATTCTGCACTATCTAGCAAGGACTCCTCTCCTCTTATGTCTCAACCAAGTAATGCTTTGGGCATTAGTTCACTGTGGGTTGTGTATGAAACTGATGCAGAAATCGATGATCTCTTATGTTGGCTGAAGGATAATGAGACCAAGGAAAAAGAACTGAAAGATTCCATCATGCAGTGGTCAAAGTCAAGATTTCATGAGCGTTCCCAGACTGAAGATCAGGTTGAGGACCAACGACCTTTTTCTATCCCAGGAAACAGAGAGAAAATAGTGTCTAATTCTCTTGTAATGAAAGCAACATCATTCCTGGAAAAGGAATATGGTCCTTTCTTTGAGTTGGATACCATTGAGGTGTTGAAGAAGCGGAGCAAAAAAGCCAGAAACACCAATGATGAAAAAATGTACAGGTGCGAATGCCTAGAACCCATTTGGCCTTCTAGGAAACACTGCATGTCTTGCCACAAAACTTTTGAGAGTGATGTTGAACTGGAGAGGCACAATGATGGCAAATGTAATGCTAGTCTTCTGGTCTTGGAGAGGAATAAGGATAGTAGTGGATATTCTAAAGGAAGAGGGAACTTGAAATGTGGTACCTCGAGTAAAAAAATCAGAGGTGGTGCTGACACAGATGGAACTTCAATCAATGGAGGTTCAACTTCAAAGCATAGCTCAAGCTTGATTAAATTTTCAAATGCAGGACCCTCATGTCCATTTAACTTCGAAGATATATGTTCGAAGTTTGTAACAAATGATTCCAACAAGGAACTTGTCAGTGAGATAGGTCTTATTGGTTCAGATGGTAACCTATCATTTGTTCCTTCTGTATCTCCTTTTGTTAGTGATTCTACAGTTATGCTATTTACAACTCTAAAGGATGATGACAATGTTGTTGGTGGTACGTCCAAAGCATCAGAAAGCCAGGTTTCTGAAGGAGGCACCGATGGAGCTGGCATATCTACTGGCAGGTTAGCTACAAATGAAAGCAATGAAGTAGGAAAATGCAACACTTCTTTGGTAGAACAAAGAGATGGAATGTCCTCTTTCCCTAGTCCTATGGGGGTTGATGGCTGCTGTGTGGTCCCTTTGTCTTCATTGAGACCATTAGTTGGAAAAGTTTCACATATTTTGAGGCTACTTAAGATTAGTCTGCTTGATATGGATGCTTCACTCCCGAAAGTTGCTCTAAAACCATCAAAGGCGGAGTTAGACAGAAGACAAGCCTGGCGTGCATTCGTTAAATCTGCTCAGACAATATATGAGATGGTTCAGGCAACAATCACATTAGAGGATATGATCAAGACAGAGTACTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCTAAATCCTCTACTTTGTCTTCCCTTGCGCTTCGCTTTTACTCCCTTGATTCGGCCATTATATATGAGAAACTGCCCAGCTCAGGTGTTACTGACAGCTCCGGACCTTCTTCCGTAGTGGAACTGAAGCAACAACCAGCCACTGAGGACGCAGATAAACCCAGAGCATGCCGGAAATCGAACAGGAAAAGGAAGGAATCAGGTGGCTGA 6372 0.4288 MIMELTDSIAAANNHPPPPLQDSHSGLGIDLNEIPSPSTFETLQETIEIVRAFHDNPGPPPEGPALLPRGLTVCAACGKHGCSGVHAIVCDGCDRGFHVSCVGVHGDGRRIDEWLCADCVAGGVKSKLWPLGVKSKQLLDINASPPREADCQELQDLRKQTVGANPFGAPFAHSNLHNGSAFGFQKASGVVTHAVRVGFEDIINHNQSLTRSFEKGLRDFISERHGVLEEGWGVEFRQSVSGSEAYAVYCAPDGKVFDSLYEVACYLGLTSGYNSMECEIRNERSGSPQPSRKRKSTKMAVANGFAEKWGTFINSFCKDPPSNGLSVECATIGKATEAEIRRKEDGHSSPEQSSDGLPLQFKDFFVLSLGKVDSRPSYQGVNLICPVGYKSAWHDMITGSLFTCEVLEGGESGPIFRIRRCSCSKYPVPVGSTILSMSSRCQQFVSQTNKEGERRTNDEMDYDVDESIQMILSDPCVPTENDVISCIESCLNETRDTFTSDIPQLVAGSVQDKTRISLADDSGSVDGISEILVEDRSSSSAWEVMSQKLVNACKDICKQKGTLKFYCKHVENEACLHECDTRNGKSHSHFSSLDKFCASIGSVSIPDVVHTENDLDSFSEVLVKWLGQDRFGLDVEFVQEVLEKLPGVQDSLQYELLNSRNDNSSFPTVENCFLVVERRGGSQYQEEEVQGLYRKSKKARLIEKCVEEDRCPPPPGKPLCSRVPNEYIGDIFQAWELIERFHEILDLKEPLSLDELEKELIYPWFDGLDFLEKSERETNGSQVLNLPGDDSNCGSPRCEVGPSGSIESSHAFIQVDTEAMKEAAQVKLASFTYARCFGVALTKAHNSLLKVLISELQSNVAALVDPSFEPAETRSRRGRRKDIDSAAPAKRTKLNMLPNNELTWPELARRYILAVLSMDGNLDSAETIARESGKVFRCLRGDGGLLCGSLSGVAGMEADAQLLADATKKIFGSLSKFNDVITIEEVDSEVKDASENLVDGDGSIPEWAKELEPARKLPTNVGTRIRKCIYNALEKNPPEWAKKILEHSISKEVYKGNASGPTKKAVLSVLTTVSGGGLPEKPPKKGKKTKTEISISDIVMKQCRIVLRRAAATDDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLAAGAYGGSHEAFVEDVRELWNNVRVAFGDQPDLVELAENLSHNFESLYNEEVVAYAQKFVEYAKLGCLSAEMRKEVDDFIASIREIPKAPWDEGVCKVCGVDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKRAIQDVTERTHIICKRRKKRFRGEVSSLYLEALTHLSTVMEEKEYWDYSVGERTFLLKFLCDELLNSSLVRQHLEQCAEFSVELQQKLRAFSVEWKGLKAKEDILSTKSAKIDVCSLNTAGEVVHKEGFTATLISVANSDTDSQNMKSVDAGRQHRSISAAVESQCTHMAREMNSAGGADHPNHQKCEGRDISTLVTSQQGHCVPVDASQIAANEAKPYHVELNATKREISTLQDSITNVQSQLLKLSVRLEFLGTDSIGRLYWASTMPRGRSCIVADASDALLHRRGMTVNRDSVDKFSFMQHSALSSKDSSPLMSQPSNALGISSLWVVYETDAEIDDLLCWLKDNETKEKELKDSIMQWSKSRFHERSQTEDQVEDQRPFSIPGNREKIVSNSLVMKATSFLEKEYGPFFELDTIEVLKKRSKKARNTNDEKMYRCECLEPIWPSRKHCMSCHKTFESDVELERHNDGKCNASLLVLERNKDSSGYSKGRGNLKCGTSSKKIRGGADTDGTSINGGSTSKHSSSLIKFSNAGPSCPFNFEDICSKFVTNDSNKELVSEIGLIGSDGNLSFVPSVSPFVSDSTVMLFTTLKDDDNVVGGTSKASESQVSEGGTDGAGISTGRLATNESNEVGKCNTSLVEQRDGMSSFPSPMGVDGCCVVPLSSLRPLVGKVSHILRLLKISLLDMDASLPKVALKPSKAELDRRQAWRAFVKSAQTIYEMVQATITLEDMIKTEYLRNDWWYWSSFSAAAKSSTLSSLALRFYSLDSAIIYEKLPSSGVTDSSGPSSVVELKQQPATEDADKPRACRKSNRKRKESGG* 2124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0051 2123 Coils Coil 1525 1545 - -
Lan5g0051 2123 Pfam Methyl-CpG binding domain 219 272 IPR001739 GO:0003677
Lan5g0051 2123 ProSiteProfiles FYR domain FYRC motif profile. 509 658 IPR003889 GO:0005634
Lan5g0051 2123 Pfam PHD-finger 1253 1299 IPR019787 -
Lan5g0051 2123 Pfam PHD-finger 73 120 IPR019787 -
Lan5g0051 2123 Gene3D - 214 305 - -
Lan5g0051 2123 SMART PHD_3 1253 1299 IPR001965 -
Lan5g0051 2123 SMART PHD_3 73 120 IPR001965 -
Lan5g0051 2123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1253 1300 IPR013083 -
Lan5g0051 2123 Gene3D - 357 472 - -
Lan5g0051 2123 ProSiteProfiles FYR domain FYRN motif profile. 356 409 IPR003888 GO:0005634
Lan5g0051 2123 ProSitePatterns Zinc finger PHD-type signature. 1254 1298 IPR019786 -
Lan5g0051 2123 MobiDBLite consensus disorder prediction 2100 2123 - -
Lan5g0051 2123 CDD Bromodomain 1100 1206 - -
Lan5g0051 2123 PANTHER OS02G0192300 PROTEIN 23 2121 - -
Lan5g0051 2123 CDD PHD_SF 73 119 - -
Lan5g0051 2123 SUPERFAMILY Bromodomain 1089 1208 IPR036427 GO:0005515
Lan5g0051 2123 Gene3D - 1093 1218 IPR036427 GO:0005515
Lan5g0051 2123 ProSiteProfiles Zinc finger PHD-type profile. 1251 1301 IPR019787 -
Lan5g0051 2123 MobiDBLite consensus disorder prediction 2081 2123 - -
Lan5g0051 2123 MobiDBLite consensus disorder prediction 2081 2098 - -
Lan5g0051 2123 MobiDBLite consensus disorder prediction 1902 1926 - -
Lan5g0051 2123 SUPERFAMILY FYVE/PHD zinc finger 1240 1302 IPR011011 -
Lan5g0051 2123 SUPERFAMILY DNA-binding domain 220 297 IPR016177 GO:0003677
Lan5g0051 2123 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1333 1377 IPR028942 -
Lan5g0051 2123 ProSiteProfiles Bromodomain profile. 1144 1192 IPR001487 GO:0005515
Lan5g0051 2123 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 23 2121 - -
Lan5g0051 2123 SUPERFAMILY FYVE/PHD zinc finger 71 126 IPR011011 -
Lan5g0051 2123 Pfam Bromodomain 1142 1196 IPR001487 GO:0005515
Lan5g0051 2123 ProSiteProfiles Zinc finger PHD-type profile. 71 122 IPR019787 -
Lan5g0051 2123 MobiDBLite consensus disorder prediction 1903 1926 - -
Lan5g0051 2123 CDD PHD1_Lid2p_like 1253 1298 - -
Lan5g0051 2123 ProSitePatterns Zinc finger PHD-type signature. 74 119 IPR019786 -
Lan5g0051 2123 MobiDBLite consensus disorder prediction 1789 1825 - -
Lan5g0051 2123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 125 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0051 Lan-Chr5 580357 597107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0051 21 2123 C2H2 Transcription Factor Family AT3G01460 44.795 0.0 1694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan5g0051 MBD 3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0051 K22768 - gmx:100791814 2828.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0051 5 580357 597107 Lan8g0858 8 10354666 10367676 LSH
Lan5g0051 5 580357 597107 Lan20g1195 20 17336297 17350728 LSH