Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0050 ATGGATTGTGGACGTATTTTCTTCGACACCTCTTCATGTCGCAGGAATAACATGCTCTTCCTTGGAAATGGTGATTTTTCTTTTCAAGTAGGAAGATCGATGATGAGCATGGAGGAAAGCTCAAAGAGGCGACCTTTTTTCAGCTCACCCGACGAATTGTTTGATGATGAGTATTACGAGGAGCAGTTACCAGAGAAGAAGCGACGCCTCACTTCGGATCAGGTCCATCTGTTGGAGAAAAGCTTTGAAGAAGAGAACAAACTGGAGCCAGAGAGGAAGACTGAGTTGGCCAAGAAGCTGGGGTTGCAGCCGAGGCAGGTGGCTGTGTGGTTCCAAAACCGCAGGGCTCGATGGAAAACAAAGCAACTCGAAAGGGATTACGATGTTCTTAAGGCTTCCTATGACTCCCTACTTTCATCATATGATTCCATTGTGAAGGACAATGAGAAACTCAAATCTGAGATGGTATCCTTACATGAGAAGCTTCAAAATGAAGCTAAAGACATGCCTGAAGAGGAACCAATATCAGACAAAAAAACCGATACACTGCCAGTGAATATAGCTGAAATCATCCGCATGAAGGTCGTCGAGGACCGGCTGAGCATCGGGAGTGTTGGCAGTGCAGTTGTCGATGAGGGTAGTCCTCGGCTTGTTGTTGGAAGTGATGATGGAAGTGATGATGGTACAAGTTACCTTTCAGATGTGTTTGTGGGACATGAAACTCAGCACCAAAACAATGAGGAAGGAGAGGCATTGGGTTGGTGGGGTAATATGTTGCATAATGGAGCACCAGTGCTTTTTTAA 804 0.4552 MDCGRIFFDTSSCRRNNMLFLGNGDFSFQVGRSMMSMEESSKRRPFFSSPDELFDDEYYEEQLPEKKRRLTSDQVHLLEKSFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSSYDSIVKDNEKLKSEMVSLHEKLQNEAKDMPEEEPISDKKTDTLPVNIAEIIRMKVVEDRLSIGSVGSAVVDEGSPRLVVGSDDGSDDGTSYLSDVFVGHETQHQNNEEGEALGWWGNMLHNGAPVLF* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0050 267 CDD homeodomain 66 122 IPR001356 GO:0003677
Lan5g0050 267 Coils Coil 148 168 - -
Lan5g0050 267 Gene3D - 59 128 - -
Lan5g0050 267 SMART HOX_1 64 125 IPR001356 GO:0003677
Lan5g0050 267 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Lan5g0050 267 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Lan5g0050 267 SUPERFAMILY Homeodomain-like 57 123 IPR009057 -
Lan5g0050 267 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Lan5g0050 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 231 IPR045224 GO:0003700
Lan5g0050 267 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Lan5g0050 267 Pfam Homeobox associated leucine zipper 121 163 IPR003106 GO:0006355|GO:0043565
Lan5g0050 267 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Lan5g0050 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0050 Lan-Chr5 576323 579692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0050 1 256 Homeobox Transcription Factor Family AT3G01470 57.091 4.71e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan5g0050 Homeodomain 2.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0050 K09338 - gmx:100813420 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0050 5 576323 579692 Lan20g1194 20 17331905 17334968 LSH