Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0024 ATGGAAAACTCTTCTATTCCAAAACAATCTCAATCAATCTTCACCCACGTAGCTTCAAGACAACTCAATTCATTCCAATGCCGAAAACGACCTCGTTTCGATGGCTTCGTTTCTGGATTCAATGAAACTGCAGCAATCGCTGTTCAACATAATGCTGAAAACTCTATTCCCCTTTCTCTCTCTTTCTGCAAGACTTCGAAATTTTCGCACATACTAGCTTTGTCTGATGAGGATGGATACATGAACTTGTTTGATACTCGCCGCAACTTGTCCAGTTCTACATCCTTCGAAGATAATGCAGAGAAATCTAAGATTTGCGAATGGGTTACGCATCATAATGCTGTTTTCGATGTCTGTTGGATTAAGGAAGATACACAGATTCTCACAGCTTCTGGTGATCATACAATGAAGGTATGGGATGTTCAAGAAAAGAAATGTATTGGAGTGTTGATGGGGCACACAGGGAGTGTGAAATCTATGTCTTCTCATCCAACCAATTCTGATATAATTGTCTCTGGTTCAAGAGATGGATCTTTTCGTTTTTGGGACTTAAGATGCAACTCCACTGCTAATAGGTTTGGGGACCCTAACATATATACTTCGACGGAAGTTGTCAGAGGAGCACATATTTCGTCTCAAGCAAAACGAGTTAGGAAGAGCAAGGCTGCTTCCATGAGCATTACATCTGTTCTTTGCCTCAAGGATCAAGTCTCCATAGCCACTGCTGGGGCGGTCGATAGTGTGTTGAAGTTTTGGGACACTAGAAACTTGAAAACTTTTGTCACGCAGACATGTCCTCATCCTCAGTCGACAGAAAAGAAAAGATTACATGGTATATCGAGCTTGTCCCAGGATGACAGTGGACTTTTTCTATCAGCCTCTTGCATGGATAACCGAATATATTTGTATAACATCCTTCAACTTGAAAAGGGACCTTTAAAATATTTTTATGGATCTCAAATAGACACATTTTTTGTAAAGGCTTCAATTAGCCCTGATGCAGGTCACCTAGTCAGTGGTTCTAGTGATGGAAAAGCCTATGTTTGGCAGGTTAACAAGCCTCAAGAGAAACCACTTGCTTTGAAAAGTCATGATGGAGAAGTTACAGTAGTTGACTGGTGCCCTTCTGAAATTGGCAAATTAGCAACTGCTTCTGATGATTTCACAGTTCGAATTTGGAGTAAAAACAGTTATGTCTGCGATAGAAAGTTTCCATATTCCATCCGAAGAAGAGTGATGGCAATGCCCAGAACAGAACGTAAAGTGCTTTTAAGTAGTGAAGAAATGTGTCTGAAGTCAGAACACAAGGCTTTTTTATCCAATGAAACACTGCACCAACCAATTACATCAGACATTCCAATAACGCCACCAAAAGTACATACGTCTGAAGACCGTAAGGACCAACTTTCTTCAAGTTTCGATCCTACTGAATCATCCGAAAAAACTCCACAATCTACTTTGAAGAGCCCTTCATCTGTTTTGAGCCCTCCATCCTCCCTCAAAAGAACTATAAGAGACTACTTTTTAGCTTCTTCATGA 1539 0.4048 MENSSIPKQSQSIFTHVASRQLNSFQCRKRPRFDGFVSGFNETAAIAVQHNAENSIPLSLSFCKTSKFSHILALSDEDGYMNLFDTRRNLSSSTSFEDNAEKSKICEWVTHHNAVFDVCWIKEDTQILTASGDHTMKVWDVQEKKCIGVLMGHTGSVKSMSSHPTNSDIIVSGSRDGSFRFWDLRCNSTANRFGDPNIYTSTEVVRGAHISSQAKRVRKSKAASMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKTFVTQTCPHPQSTEKKRLHGISSLSQDDSGLFLSASCMDNRIYLYNILQLEKGPLKYFYGSQIDTFFVKASISPDAGHLVSGSSDGKAYVWQVNKPQEKPLALKSHDGEVTVVDWCPSEIGKLATASDDFTVRIWSKNSYVCDRKFPYSIRRRVMAMPRTERKVLLSSEEMCLKSEHKAFLSNETLHQPITSDIPITPPKVHTSEDRKDQLSSSFDPTESSEKTPQSTLKSPSSVLSPPSSLKRTIRDYFLASS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0024 512 MobiDBLite consensus disorder prediction 472 499 - -
Lan5g0024 512 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 150 185 - -
Lan5g0024 512 Pfam WD domain, G-beta repeat 361 394 IPR001680 GO:0005515
Lan5g0024 512 Pfam WD domain, G-beta repeat 110 140 IPR001680 GO:0005515
Lan5g0024 512 Pfam WD domain, G-beta repeat 145 183 IPR001680 GO:0005515
Lan5g0024 512 MobiDBLite consensus disorder prediction 448 500 - -
Lan5g0024 512 SMART WD40_4 143 183 IPR001680 GO:0005515
Lan5g0024 512 SMART WD40_4 309 350 IPR001680 GO:0005515
Lan5g0024 512 SMART WD40_4 101 140 IPR001680 GO:0005515
Lan5g0024 512 SMART WD40_4 354 394 IPR001680 GO:0005515
Lan5g0024 512 SMART WD40_4 213 253 IPR001680 GO:0005515
Lan5g0024 512 SMART WD40_4 269 304 IPR001680 GO:0005515
Lan5g0024 512 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 9 510 - -
Lan5g0024 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Lan5g0024 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 352 IPR001680 GO:0005515
Lan5g0024 512 PANTHER BNAA06G31940D PROTEIN 9 510 - -
Lan5g0024 512 PRINTS G protein beta WD-40 repeat signature 127 141 IPR020472 -
Lan5g0024 512 PRINTS G protein beta WD-40 repeat signature 170 184 IPR020472 -
Lan5g0024 512 PRINTS G protein beta WD-40 repeat signature 337 351 IPR020472 -
Lan5g0024 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 394 IPR001680 GO:0005515
Lan5g0024 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 192 IPR001680 GO:0005515
Lan5g0024 512 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 361 394 - -
Lan5g0024 512 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Lan5g0024 512 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 142 - -
Lan5g0024 512 SUPERFAMILY WD40 repeat-like 62 406 IPR036322 GO:0005515
Lan5g0024 512 Gene3D - 33 190 IPR015943 GO:0005515
Lan5g0024 512 Gene3D - 191 409 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0024 111 314 U-box Gene Family AT1G04510 27.434 1.84e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0024 K11790 - gmx:100819114 705.671