Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0019 ATGGACTCACATGGTGAAGAACAAAACGACGCCGTTATACCATATTCTCACAGAGAAGAGGATGAAGAAGAAGAAGAAGAAGAAGATGAACAACTACATCAACATCAACATCAACCTCACAATTCTCACCCCCTTACTGGTGATGGTGCTAGTCCTGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACTACCATTGCCCAATTTATCAAACACTTTTGTAAATATGGTGAGATTACTGATTCTGTCATCATGAAGGACCGTAAAACCGGCCAGCCTCGTGGATTTGGGTTTATAACATATGCAGATCCCTCAGTCGTTGATAAAGTCATTGAGGACACTCATGTCATCAATGGCAAACAAGTTGAAATTAAGCGCACGATACCAAGGGGAGCCGGTGGTTCTAAGGATTTTAGGACAAAGAAAATTTTCGTAGGTGGGATTCCTTCAACTGTGACTGAAGATGAACTAAGAGACTTCTTTAGCCGCTATGGAGAAGTCAAGGATCACCAAATAATGCGTGACCACTCCACCAATCGTTCTCGTGGTTTTGGGTTTATCACCTTTGATGCTGAGGAAGCTGTTGATGATCTTCTGTCTTTGGGGAACAAGATTGAGTTTTCTGGAGCTCAGGTGGAAATCAAGAAGGCAGAACCAAAGAAGCCAAACCCACCGCCTCAATCATCCAAGCGTTACAATGAGTCCAGGTCTTCGTATGGTGGCGGTGGAGGCGGATATGGAGGAGATGCTTATGAAGGATTTGGTGGTGGCTTTGGTGTTGGGGGTTACAGGTCCGGTGCTGGTGCCTATGGTGGTCGGGGTGCTGCTGCATATGGTGGCTATGGAAGCGAATTTGGAGGCTACGGTGGCTATGCTGGTGCGATGGGCCCCTATAGAGATCCTTCCCTTGGATATGCCAGTCGTTATGGTGGAGGCTTTAGCAGAGGCTATGGAGGTGAATTTGGTGGGTATGGTGGACCTAGTGATAGTTATGGCGCGTATGGTGGTGCTGCCAGTGGTGGTGGTGGTGGTTCTTCTGGCGCTGGTGCCTATCAAAGTGGTTATGATGCTGCCGGCTTAGGTGGTGGATATGGAGGAGGGGCTAGTGGAGGCTCCTTTTATGGAAGTAGGGGAGGTTACAGTGCTGGTCGATATCATCCTTATGGAAGATAG 1173 0.4731 MDSHGEEQNDAVIPYSHREEDEEEEEEEDEQLHQHQHQPHNSHPLTGDGASPGKIFIGGLARETTIAQFIKHFCKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAGGSKDFRTKKIFVGGIPSTVTEDELRDFFSRYGEVKDHQIMRDHSTNRSRGFGFITFDAEEAVDDLLSLGNKIEFSGAQVEIKKAEPKKPNPPPQSSKRYNESRSSYGGGGGGYGGDAYEGFGGGFGVGGYRSGAGAYGGRGAAAYGGYGSEFGGYGGYAGAMGPYRDPSLGYASRYGGGFSRGYGGEFGGYGGPSDSYGAYGGAASGGGGGSSGAGAYQSGYDAAGLGGGYGGGASGGSFYGSRGGYSAGRYHPYGR* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0019 390 MobiDBLite consensus disorder prediction 213 239 - -
Lan5g0019 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 210 IPR000504 GO:0003723
Lan5g0019 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 122 IPR000504 GO:0003723
Lan5g0019 390 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 22 390 - -
Lan5g0019 390 MobiDBLite consensus disorder prediction 1 18 - -
Lan5g0019 390 SMART rrm1_1 142 215 IPR000504 GO:0003723
Lan5g0019 390 SMART rrm1_1 54 125 IPR000504 GO:0003723
Lan5g0019 390 Gene3D - 12 136 IPR012677 -
Lan5g0019 390 Gene3D - 137 252 IPR012677 -
Lan5g0019 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Lan5g0019 390 SUPERFAMILY RNA-binding domain, RBD 139 249 IPR035979 GO:0003676
Lan5g0019 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 129 IPR000504 GO:0003723
Lan5g0019 390 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 22 390 - -
Lan5g0019 390 SUPERFAMILY RNA-binding domain, RBD 32 132 IPR035979 GO:0003676
Lan5g0019 390 Coils Coil 18 38 - -
Lan5g0019 390 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0019 Lan-Chr5 204532 207335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0019 53 213 Eukaryotic Initiation Factors Gene Family AT3G16380 28.324 3.40e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0019 K12741 - gmx:100793209 382.874