LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan4g1901	ATGGATGTTAATGTGAGTATATTATTGTTTGTTTGCTTTTGTGTGCTCTTAATGTGCTATAGAGCTGAAAATAAATCAATTAAATTGGGGTCCAGCATTGTTGCTGGGACTAATTCATCATGGGAATCAGGCTCTGGTGATTTTGCCTTTGGATTCTACCCTCTTGTTACTGGTCACTATCTTGTTGGAATTTGGTTTAATAAGATTCCAAATAAAACACTAGTTTGGTCTGCTAACAGAGATGATCCAGCTGAAATAGGATCAACCATCAATCTTACACTCAGTGGCCAATTTGTGATACAACATGCTAACAACACTTCATTTCCAATATACAATGGTACTACCAATAATGCAACTTCTGCTATGATGCAGGACAATGGTAATTTCATCTTGCTCAACTCTCTTTCAACCATATGGGAGAGCTTTGATTCACCAACAGATACAATTCTACCTGGCCAAACTTTAAAGATGGGTCATATACTTTATTCCAATGCCAATATTACAACACAAGACTACTCAACTGGACAATACAAGTTGGAGGTTCAGACTGATGGTAACATTGTTATCTCTGCATTTCGATTTGATGATCCTGGATATTGGTACACTTCAACTGATCATAATACAAATGTCACACTTGTTTTTAATAACACCACAGCTTTTCTTTATGCTGTCAATGACACACACAACATATTCAATATGACCACAGCTACACAAGTGCCTAATCCAATACAGAATTACTATCATCGTGCAACCATCAATGACCATGGAAATTTTCAACAACTGATTTACCTTAAAGAAAGTGGAAATCATTGGACAACTATATGGGAGGCCATAACACAACCCTGCACAGTGAATGCTATTTGTGGTGTCTATGGCTTTTGCACTTCACCTGACAATAGGACAATCAGTTGTGATTGTTTGCCAGGTTACACACCTTTGGATCCAAGTGTTCCCTCCAGAGGGTGCTATCCCAAAGTTGTCATGGATTTCTGTTCTCATAATTCATCTTCATCATCAAACTTCACTGTGGAAGAAATTCAAGATGCTGATATACCAAACCAAATTTATTCTGATCTGCAAAGGATAGACTCTTCTGATCTCAACAGTTGCAGGAATGAGGTGATCAATGATTGTTTCTGCATGGCTGCTGTTTTGATTGAATCTGTTTGTTATAAGAAAAGGACACCTCTTTCAAATGCCAGAAAAAGCATTCCTGCAACTAGCAATAGAGTGGCACTTATTAAAGTTGCTCAAGTTCATGAAGACAATGAAAATGATTCACCTTCTCAGGTTGTTTATCTAGTAGCTCTATCAGCATGCTCCTTTTTTGCTATTGTTTTTGCAACTATTGCTATCTATCATCACCCAACATTTCAAAATCTCGTGCATAAAGGGTCACCCCCAAAGCCAGACCCTGTGGACATCAATCTAAAGTCATTTTCATTCCAAGAGTTGAGACAAGCAACAAACTGGTTTAGGAATACACTTGGCCAGGGAGCCTTTGCTATAGTCTATAGTGGTGTTTTAACCTTGGAGGGTGAAGAAGTTGAGGTTGCTGTGAAAAAACTTGAAAAACATGAAGAAAAAGGTGAGAAAGAATTTGTGAATGAAGTTCAAGTAATTGGTATGACTCATCATAAGAATCTTGTAAGGTTATTGGGTTTCTGCAATGAGCAGAATCATAGACTTCTTGTATATGAGATGATGAGAAATGGTACGTTATCCAATTTCCTTCTTGGGAAGGAGGATATACCAAGATGGGAAGATAGAGCCAAAATTGTTGTAGAAATTGCTAGAGGCTTGATGTACTTGCATGAAGAGTGTGATCCTCAGATCATTCATTGTGACATAAAGCCACAAAATGTTCTTTTAGACTCAAATTATAGAGCAAAAATTGCAGATTTTGGACTGGCAAAACTACTAATGAAAGACAGAACAAGAACAAGTACGCATGTTGTAAGAGGTACTATGGGATATATGGCACCAGAATGGCTCAAAAATGTACCTATCACTGCAAAAGTGGATGTCTACAGCTTTGGTGTCATGATGTTGGAAATCTTGTTTTGCAGAAGGCACATTGATTTGCATCAAATTGAAGATGGTGGTGATGACATGATACTTATAGATTGGGTTCTTCATTGGGCAAAAGTAGGGAATCTAAGAGTTATTGTGAGCCATGATCTTGAAGCTGTTAATGATTTCAAGAGGTTTGAGAGAATGGCAATGGTTGGGTTGTGGTGCTTATGTCCTAACCCAACTCTTAGACCATCTATGATAAGAGTGCTACAGATGTTGGAAGGAAACATGGAAGTTGGTGTTCCACCATTGTTTGATGGGGAAATGTTGTAA	2349	0.3789	MDVNVSILLFVCFCVLLMCYRAENKSIKLGSSIVAGTNSSWESGSGDFAFGFYPLVTGHYLVGIWFNKIPNKTLVWSANRDDPAEIGSTINLTLSGQFVIQHANNTSFPIYNGTTNNATSAMMQDNGNFILLNSLSTIWESFDSPTDTILPGQTLKMGHILYSNANITTQDYSTGQYKLEVQTDGNIVISAFRFDDPGYWYTSTDHNTNVTLVFNNTTAFLYAVNDTHNIFNMTTATQVPNPIQNYYHRATINDHGNFQQLIYLKESGNHWTTIWEAITQPCTVNAICGVYGFCTSPDNRTISCDCLPGYTPLDPSVPSRGCYPKVVMDFCSHNSSSSSNFTVEEIQDADIPNQIYSDLQRIDSSDLNSCRNEVINDCFCMAAVLIESVCYKKRTPLSNARKSIPATSNRVALIKVAQVHEDNENDSPSQVVYLVALSACSFFAIVFATIAIYHHPTFQNLVHKGSPPKPDPVDINLKSFSFQELRQATNWFRNTLGQGAFAIVYSGVLTLEGEEVEVAVKKLEKHEEKGEKEFVNEVQVIGMTHHKNLVRLLGFCNEQNHRLLVYEMMRNGTLSNFLLGKEDIPRWEDRAKIVVEIARGLMYLHEECDPQIIHCDIKPQNVLLDSNYRAKIADFGLAKLLMKDRTRTSTHVVRGTMGYMAPEWLKNVPITAKVDVYSFGVMMLEILFCRRHIDLHQIEDGGDDMILIDWVLHWAKVGNLRVIVSHDLEAVNDFKRFERMAMVGLWCLCPNPTLRPSMIRVLQMLEGNMEVGVPPLFDGEML*	783

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan4g1901	782	SMART	serkin_6	490	765	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan4g1901	782	Pfam	Protein kinase domain	494	763	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan4g1901	782	ProSitePatterns	Protein kinases ATP-binding region signature.	496	522	IPR017441	GO:0005524
	Lan4g1901	782	Gene3D	-	146	286	-	-
	Lan4g1901	782	ProSiteProfiles	Protein kinase domain profile.	490	777	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan4g1901	782	SUPERFAMILY	Protein kinase-like (PK-like)	477	770	IPR011009	-
	Lan4g1901	782	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	612	624	IPR008271	GO:0004672\|GO:0006468
	Lan4g1901	782	Gene3D	-	20	143	IPR036426	-
	Lan4g1901	782	PANTHER	SERINE/THREONINE-PROTEIN KINASE	7	778	-	-
	Lan4g1901	782	ProSiteProfiles	Bulb-type lectin domain profile.	26	144	IPR001480	-
	Lan4g1901	782	SMART	blect_4	32	145	IPR001480	-
	Lan4g1901	782	PIRSF	SRK	1	778	IPR024171	GO:0004674
	Lan4g1901	782	Gene3D	Transferase(Phosphotransferase) domain 1	569	771	-	-
	Lan4g1901	782	Gene3D	Phosphorylase Kinase; domain 1	469	568	-	-
	Lan4g1901	782	Pfam	S-locus glycoprotein domain	243	312	IPR000858	GO:0048544
	Lan4g1901	782	Pfam	D-mannose binding lectin	73	159	IPR001480	-
	Lan4g1901	782	SUPERFAMILY	alpha-D-mannose-specific plant lectins	60	204	IPR036426	-
	Lan4g1901	782	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	7	778	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan4g1901	Lan-Chr4	27281737	27284526	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan4g1901	476	768	Receptor kinase-like Gene Family	AT1G60800	40.803	8.28e-65	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Lan4g1901		Pkinase	1.2e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan4g1901	-		-	aprc:113871840	1146.34