Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1898 ATGTTCTCTTCATCCACATATCATGACTCCTTCACTAACCCTTACCTTACCACATTTCCTTCTTCTCCTTACCCTAATAGTAATAATGCTAATACTTTTCCTTGTTTCATTGACCCTACTCCTCCTCCTCCTCCTCACGAGTTTAATGATTTTGCAGCTAACACCTTTCTTCATGATCCACTTCTTAATGTTGTTCCATTCATACCCTCCTCCACCACTACTAATCAAACTCAAACCCATCATCATCATCATCATAATCATCATTATAATATGGCAATGCTTGATAATAATCAATTACAAGATAGTGTCTCCCCCTATGGTGTTACTCTACACCATGGTGGTAGCATTAATCCCAATTTTATGATTCAGAAACCAGCTGCTGCTGCTGCTGCTGCAGCTGCCATAGCAAAGAAAGATAGGCACAGCAAGATTCACACATCACAGGGTTTGAGGGATAGGAGGGTGAGGCTTTCAAGTGAAATAGCAAGAAAGTTCTTTGATCTTCAGGACATGCTTGAGTTTGATAAACCTAGTAATACCCTTGAGTGGCTTTTCACAAAGTCAGAGAACGCTATCAAAGAACTTGCTAGAAGTAAGAATAGTAGCAGCTGCAGTCAGAAGCAGGCACATAACAACAACACATCGAATGAGAAAGTGCCATTATTGAGTGGTGATGCTTCTAAAGGGAGGGTGAAGTTGAAATGTGGACAGAGGGATCAAGATGTTTGTAGTGCTCAGACTAAAAAGGAGTCAAGGGAAAAGGCAAGAGCAAGAGCAAGAGAAAGGACTTGTCTCAACAAGATGTGCAACAACACCAGTGGGAGATTACTAGAAGAAAGGTCATCATGCCCTGCAACTTCATCAAACACTTCTCAATATGAACCTAATTGTGCAAGATGGACACATCATCATCAGATTCTTCAACCTAATTACCCTTCTTACACTCATCACCAACTTGGTATAAGTGAAGCACCTCTTAGAGATAGAGATGCCTTTGATGTGATTGAGGAATCATCCATTATGATAAAAAGGAACAACATCAAGTCATCTTTGATGCCTTCTTATAACCAACAAAACCTAGTGAACTCTAAGGAACCAAGTTTCAACAACAACAATAATGATGATGACTACCATTCATTCCCCTATACCACTCAAAATTGGGATACTAATAATGAGAACTCCAACTTTTGTGGAATAGCCACCATGAATCTATCTACATTTTTCATGAACCAGTGA 1236 0.3964 MFSSSTYHDSFTNPYLTTFPSSPYPNSNNANTFPCFIDPTPPPPPHEFNDFAANTFLHDPLLNVVPFIPSSTTTNQTQTHHHHHHNHHYNMAMLDNNQLQDSVSPYGVTLHHGGSINPNFMIQKPAAAAAAAAAIAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKNSSSCSQKQAHNNNTSNEKVPLLSGDASKGRVKLKCGQRDQDVCSAQTKKESREKARARARERTCLNKMCNNTSGRLLEERSSCPATSSNTSQYEPNCARWTHHHQILQPNYPSYTHHQLGISEAPLRDRDAFDVIEESSIMIKRNNIKSSLMPSYNQQNLVNSKEPSFNNNNNDDDYHSFPYTTQNWDTNNENSNFCGIATMNLSTFFMNQ* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1898 411 MobiDBLite consensus disorder prediction 197 223 - -
Lan4g1898 411 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 46 406 - -
Lan4g1898 411 ProSiteProfiles TCP domain profile. 137 195 IPR017887 -
Lan4g1898 411 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 46 406 IPR005333 GO:0003700
Lan4g1898 411 MobiDBLite consensus disorder prediction 197 221 - -
Lan4g1898 411 Pfam TCP family transcription factor 136 267 IPR017887 -
Lan4g1898 411 ProSiteProfiles R domain profile. 249 275 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1898 Lan-Chr4 27265965 27267974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1898 135 263 TCP Transcription Factor Family AT1G67260 42.038 9.99e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lan4g1898 TCP 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1898 - - lang:109346833 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0828 8 10153513 10155611 Lan4g1898 4 27265965 27267974 LSH
Lan4g1898 4 27265965 27267974 Lan8g1133 8 15287262 15290151 PCT