Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1894 ATGGAGGAACAGAGTAACTGCTTCGAATGCCTGAAACGCAGTATCAACTGTGATTTTTGTGATAAAGTTGTATTCAATTATGGATTCTCCAATTCTCCTTTGCCTTTCGGATCCTCTGCAATCGTCCACATTTGTGGTGGTGAAGCTTCATCTGCTCAATTTATATTGCAGTACATGTCCACTCTTCACAACAACTGTTTTACCAATTATGTAAATGAATATATTTTGGATAGTAATGAAGGCACTGGAAGTGATGATCATCCTCATAATGGAGGAATTCAATATACTAATGTGGTCAATGGTGGAATTGATTCAGAAGATTCTGAAACCACAAAAGCTTCTTCCAGGAACTCAACTTGTAATCATTCTGGAAGGTTTTCTTGCACAAGGACAATCACTTCACTGGCTGCGATTGCTCGTGTGGGAGTTTCTTCCTCTTCTACTTTGCAAGATATTGCTTCTGCTTTCTTGTCTGGGTTAATCGAAGATCATGTGTTGGATTCACTTAATCTCTTGATTGAAGGGAAACCTTCAGGACGGGACAGTATAAATTTCCTCAGTTTAATTGGGTTGCCATCATTTGAGGAAGATGCTTTTCCCGGCTCCTTGAGGCATCCCAACATCGTTCCTGTTCTCGCGATACTTAGAACATCTGATCACGTTAACATGGTGCTTCCGAAGACTCCATATAACTTGGAACACATTCTTCATTTTAACCCAAATGCCTTAAAGTCTGATTGGCATAGAAGATTTCTTATATATCAGCTACTCTCGGCCTTAGTATACTTACATGGTTTAGGGGTTTCCCATGGCAATATATGCCCCTCCAATATCATGTTGACTGACTCATTATGGTCTTTGCTGAGATTATGGAGTGAAACTGATTCTAATTTAACTTTGCAAAAGAATGAAAGTGTTAATTCTGGCCCTGCCAAAATTGGTTGCTGTAATAGCGCTTGTCATTCTAATGGCCTTTACGCTGATCTAAAGCTTTCTCCATCAATAGATTGGCATTCTAGCTTTCATCAGTGGTGGAGAGGAGAATTAAGTAATTTTGAGTATTTACTCATCTTAAACAGATTAGCAGGAAGAAGGTGGGGGGATCATACATTTCATCCAGTAATGCCTTGGGTAATAGATTTTAGCTCAAAACCTTATGATAATTGTGATGCAGGATGGCGAGACTTAACCAAGAGCAAATGGCGCTTGGCAAAAGGTGATGAACAGTTGGACTTCACATATTCCACTTCTGAAATCCCTCATCATGTATCAGATGAATGTCTGTCTGAGTTGGCTGTCTGTAGTTATAAAGCAAGAAGGTTGCCTTTGAGTATTCTCCTAATGGCTGTCCGTTCAGTGTACGAACCTAATGAGTATCCTTCCACAATGCAGAGGCTCTATCAATGGACCCCCGATGAATGCATTCCTGAGTTTTACAGTGATGCCCAAATTTTTAGGTCAATACATGATGGTATGGCTGATTTGGCTGTGCCTTCTTGGGCAGAGTGTCCTGAGGATTTCATTAAATTGCACCGTGATGCATTAGAAAGTAATAGGGTATCATTTCAACTACATCATTGGATAGATATAATCTTTGGGTACAAAATGTCCGGCCAGGCAGCCGTTACTGCTAAAAATGTGATGCTTCCTCCATCAGAACCTATGATGCCAAGATCAACAGGACGCCGTCAACTGTTTACACGGCCACACCCAGTTCGTCATGCCACTGCCAGAATAACACGTCATGGTACCAATAAATATGGCAAGGTTTGGAGCCAAGAAAGTGAGATGCAGCCAGAGACAACTCTCCTATCTGAAACTGCCTATCTACAAGAACTAGAACAAGCATCTGCTTTTTCTGAACATGCTAGGCATTTGAATGCTTGTTACCATTATCCATTAAATCAAATAGAGAGGAACATATCATCCTTGGGTGATCCAGCAACAGAGACATCTAGTGAAAATTACTGGGTGCCATACAAAACAAATCAAATTTCTTTTCTTGAGCACATGAAGGTGGAAGATGAAGGCTCCTCAGGATATCCAGACTTGTTGCTTTGGAGGCAGAAATTAGCTTCTTCAAGACTCGGCTCCGAAGATGTTGCCAGGGACATATTTTCTGTTGGTTGTCTCTTAGCAGAACTTCATATTTGCAAGCCACTCTTCGATTCAACCTCATTGGCAGTATACTTGGAGGATGGTATCTTACCAGGTCTCCTGCAGGAACTACCTCCTCATGTTAGATTACTTGTTGAAGCATGCATCCAAAAGGATTGGATGAGGAGACCATCAGCTAAAATTCTTCTGGAATCACCTTATTTTCCAAAGACTGTCAAGTCTTCCTACTTGTTTCTTGCTCCACTTCAGCTTGTAGCTAAAGATGAAACCCGTCTTTGTTATGCTGCAAATCTTGCAAAGCAGGGAGCTCTCTGGGAAATGGGCACCTTTGCAGCTGAAATGTGTGCTCCTTACTGCTTACCACTTGTATTAAATGCTGTGAATGATACTGAAGCTGAATGGGCATACATACTACTGAAAGAATTCATGAAATGCTTAACAGGACATGCAGTGAAAAAATTGATCTTGCCAACCATACAGAAGATTTTACAGACCACAGGCTATTTACATCTAAAGCTGTCCTTTTTACAAGATTCATTTGTACGTGAGATATGGAATCGAGTTGGCAAACAAGCATACCTGGAAACTATCCACCCGTTAGTCTTGTCAAACTTGTATATTTCTCCGAATAAAAGTTCAGCTTCCTCTGCTTCAGTGCTTCTAATTGGTTCCAGTGAGGAGCTCGGGATACCTATCACAATCCATCAGACAATCTTGCCTCTTGTCCACTGCTTTGGGAAAGGATTATGTGCTGATGGAATTGATGTGCTGGTCAGAATTGGTGGAATTTTTGGGGAATCCTTTATTGTCAAACAGATGCTTCCGCTACTGAAAAATGTTGCTCGTTCCTTCATTGATGTTTCATTCATGAATAAGCCTGATCCTGTCCAGAGTTGGAGTGCTTTAGCGCTTATTGATTGTTTGATGACGTTAGATGGCCTTGTAGCTTTCTTGACAGAAGAGGTTATTGTAAAGGAGCTTCTTCAAGACCAAGTTTGCGTACACGTTGGGGTTCTTATGCTGAAACATATGGAAATCGCAGTGCTTCAGGTTGCTGCTACTACTCTCTTTGGAATTTGTCAGCGGATTGGGGCCGATTTGACGGCATTGCATATTCTACCAAAACTGAACGAACTATTTGATGACCTTGCTTTTTCCCAGGAAGTTTCTAAAGGTTCAACTACTGTTGGCCGAAACTTGAAGGCTGCCAAGTTAAAAATTGGTGGGGACTTTCAGATTGAAAGTTATATGGATCTAGTTTTGGTTCTCTATACTTCTTTTGCATCTCTTCTTGGGATAGAGAAACTTCGTCAATGTTGTGCTACATGGTTGCTTCTCGAACAGTTTCTTCTACGCCATCATAATTGGAAATGGGAATATGCAGGAGAATCATCGAAGGGTGGTTCAGAAATTAATATTACTAGAAAACCTTCAAGTTCCCAGGGCTTCACATCTGAATACAATCCTGCAAAGCTGTTGCTTAATGGGGTTGGGTGGTCAATTCCACAATCCCAAGGAAGTAGAAATGCCAAAAACTTGATTCCTCAGAGACGACCATTTAAAGCTCATCGAAATCCAGCAGGAATGCAGGAAGGAGTAGCATACCAGATGAACCATGAGCCCTGGTTTTGGTTCCCCAGTCAAACCACCATTTGGGATGGGCCTGAATTTCCTGGAAGGATGGGAGTTCAGAAAGATGACCTTCCATGGAAGATCAGAGCATCTGTTATACACTCTATACGAGCACATCATGGAGCAGTGAGGTCCCTGGCTGTTGATCAAGATGAATGTACTGTTTTCACTGCAGGAATTGGCCAAGGGTATAAAGGAACTGTTCAGAAGTGGGAACTAAGCCAAACTAACTGTTTGTCTGGCTATTATGGCCATGAGGAGGCTGTGAATGATATTTGCATATTATCATCTAGTGGAAGAGTGGCATCTTGTGATGGAACAATTCATATTTGGAATAGTCAAACAGGGAAGCAAATATCAGTATTTGCCGAGTCCCAAGCAGAATCTGTCCATCCTACAAGCCATCTATCCTCTGCGTCAAAAATTAACAGTGACCAGGCAAATGTGCTTAATTTGAATACACTATCAAATGGAATATTGTCTAGTGCTTTTGATTCAAGCCTTTATACCTGCATGCATCTGTTAGACTCTGGTGAAAATATTGTAGTTGGCACGGGAAATGGTTCTCTCAGGTTCATTAATGTTGCTCGAGGTCAAAAGCTTCATATCTGGAGAGGGGAGTCTAACGAATCTAGTTTTCCTTCTCTGATTTCTGCCATTTATTCCTATGGTTCTGATAAGATGCAAGCAGGTGGAATTTCCACTTCGCCATCTCTAATTGCAACTGGACTAAGTTCTGGTCATTGTAAATTATTTGATACAAAGAGCAGAAATGTTATTGCCTCTTGGCGAGCTCATGATGGATATGTGACGAAGTTGGCAGCACCTGAGGAGCATCTGCTCATTTCCAGCTCACTTGACAGAACTTTACGAGTTTGGGACTTAAGAATGAATTTGCCATCCCAGCCGATTATTTTCAGAGGTCATTCAGATGGCATATCCAGTTTCTCCATCTGGGGCCGAGATGTTATCTCAATTTCCCGGAATAGGATTGGACTTCTCTCCTTGTCAAAGTCTGCCAACGAAACAGATGGGCAGCATAACATTAATCCCCAGAGACTGTACATTTCAGATAATGGAATAAGAGGATTGTCAGCATTATCAAGCATTACTATACTTCCATTCTCCAGATTGTTTCTCATTGGAACTGAAGATGGTTTTCTTAGAATTTGTTGTTAA 4929 0.4123 MEEQSNCFECLKRSINCDFCDKVVFNYGFSNSPLPFGSSAIVHICGGEASSAQFILQYMSTLHNNCFTNYVNEYILDSNEGTGSDDHPHNGGIQYTNVVNGGIDSEDSETTKASSRNSTCNHSGRFSCTRTITSLAAIARVGVSSSSTLQDIASAFLSGLIEDHVLDSLNLLIEGKPSGRDSINFLSLIGLPSFEEDAFPGSLRHPNIVPVLAILRTSDHVNMVLPKTPYNLEHILHFNPNALKSDWHRRFLIYQLLSALVYLHGLGVSHGNICPSNIMLTDSLWSLLRLWSETDSNLTLQKNESVNSGPAKIGCCNSACHSNGLYADLKLSPSIDWHSSFHQWWRGELSNFEYLLILNRLAGRRWGDHTFHPVMPWVIDFSSKPYDNCDAGWRDLTKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSILLMAVRSVYEPNEYPSTMQRLYQWTPDECIPEFYSDAQIFRSIHDGMADLAVPSWAECPEDFIKLHRDALESNRVSFQLHHWIDIIFGYKMSGQAAVTAKNVMLPPSEPMMPRSTGRRQLFTRPHPVRHATARITRHGTNKYGKVWSQESEMQPETTLLSETAYLQELEQASAFSEHARHLNACYHYPLNQIERNISSLGDPATETSSENYWVPYKTNQISFLEHMKVEDEGSSGYPDLLLWRQKLASSRLGSEDVARDIFSVGCLLAELHICKPLFDSTSLAVYLEDGILPGLLQELPPHVRLLVEACIQKDWMRRPSAKILLESPYFPKTVKSSYLFLAPLQLVAKDETRLCYAANLAKQGALWEMGTFAAEMCAPYCLPLVLNAVNDTEAEWAYILLKEFMKCLTGHAVKKLILPTIQKILQTTGYLHLKLSFLQDSFVREIWNRVGKQAYLETIHPLVLSNLYISPNKSSASSASVLLIGSSEELGIPITIHQTILPLVHCFGKGLCADGIDVLVRIGGIFGESFIVKQMLPLLKNVARSFIDVSFMNKPDPVQSWSALALIDCLMTLDGLVAFLTEEVIVKELLQDQVCVHVGVLMLKHMEIAVLQVAATTLFGICQRIGADLTALHILPKLNELFDDLAFSQEVSKGSTTVGRNLKAAKLKIGGDFQIESYMDLVLVLYTSFASLLGIEKLRQCCATWLLLEQFLLRHHNWKWEYAGESSKGGSEINITRKPSSSQGFTSEYNPAKLLLNGVGWSIPQSQGSRNAKNLIPQRRPFKAHRNPAGMQEGVAYQMNHEPWFWFPSQTTIWDGPEFPGRMGVQKDDLPWKIRASVIHSIRAHHGAVRSLAVDQDECTVFTAGIGQGYKGTVQKWELSQTNCLSGYYGHEEAVNDICILSSSGRVASCDGTIHIWNSQTGKQISVFAESQAESVHPTSHLSSASKINSDQANVLNLNTLSNGILSSAFDSSLYTCMHLLDSGENIVVGTGNGSLRFINVARGQKLHIWRGESNESSFPSLISAIYSYGSDKMQAGGISTSPSLIATGLSSGHCKLFDTKSRNVIASWRAHDGYVTKLAAPEEHLLISSSLDRTLRVWDLRMNLPSQPIIFRGHSDGISSFSIWGRDVISISRNRIGLLSLSKSANETDGQHNINPQRLYISDNGIRGLSALSSITILPFSRLFLIGTEDGFLRICC* 1643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1894 1642 Gene3D BEACH domain 335 573 IPR036372 -
Lan4g1894 1642 ProSitePatterns Trp-Asp (WD) repeats signature. 1531 1545 IPR019775 -
Lan4g1894 1642 SUPERFAMILY WD40 repeat-like 1281 1640 IPR036322 GO:0005515
Lan4g1894 1642 MobiDBLite consensus disorder prediction 104 123 - -
Lan4g1894 1642 ProSiteProfiles Trp-Asp (WD) repeats profile. 1513 1546 IPR001680 GO:0005515
Lan4g1894 1642 Pfam WD domain, G-beta repeat 1509 1544 IPR001680 GO:0005515
Lan4g1894 1642 Pfam WD domain, G-beta repeat 1327 1362 IPR001680 GO:0005515
Lan4g1894 1642 CDD PKc 202 283 - -
Lan4g1894 1642 CDD Beach 343 573 IPR000409 -
Lan4g1894 1642 SMART serkin_6 123 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1894 1642 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1513 1546 - -
Lan4g1894 1642 SUPERFAMILY BEACH domain 331 573 IPR036372 -
Lan4g1894 1642 Gene3D Transferase(Phosphotransferase) domain 1 196 334 - -
Lan4g1894 1642 ProSiteProfiles BEACH domain profile. 329 597 IPR000409 -
Lan4g1894 1642 SMART Beach_2 341 573 IPR000409 -
Lan4g1894 1642 Gene3D Transferase(Phosphotransferase) domain 1 685 782 - -
Lan4g1894 1642 Gene3D - 1478 1642 IPR015943 GO:0005515
Lan4g1894 1642 Gene3D - 1273 1477 IPR015943 GO:0005515
Lan4g1894 1642 Pfam Beige/BEACH domain 343 552 IPR000409 -
Lan4g1894 1642 SMART WD40_4 1447 1503 IPR001680 GO:0005515
Lan4g1894 1642 SMART WD40_4 1506 1544 IPR001680 GO:0005515
Lan4g1894 1642 SMART WD40_4 1600 1642 IPR001680 GO:0005515
Lan4g1894 1642 SMART WD40_4 1407 1444 IPR001680 GO:0005515
Lan4g1894 1642 SMART WD40_4 1279 1322 IPR001680 GO:0005515
Lan4g1894 1642 SMART WD40_4 1325 1362 IPR001680 GO:0005515
Lan4g1894 1642 Pfam Protein kinase domain 201 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1894 1642 SUPERFAMILY Protein kinase-like (PK-like) 201 789 IPR011009 -
Lan4g1894 1642 ProSiteProfiles Protein kinase domain profile. 135 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1894 1642 PANTHER GH12955P 1 1642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1894 Lan-Chr4 27219950 27230013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1894 1279 1545 Miscellaneous Gene Families AT5G08390 22.222 2.71e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Lan4g1894 Beach 1.2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1894 K17601 - gmx:100809116 2744.53