Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1888 ATGGGAAGAGGAAGAGTTATTGTAGAGAGAATAGAGAACAAGATCAGTCGTCAAGTAACATTCTCAAAGAGAAGGAGTGGTTTGTTGAAGAAAGCATTTGAGCTATCTGTGCTATGCGATGCTGAAATTGCTCTTATCATCTTCTCTAGTCGTGGCAAGCTTTTCCAGTTCAGCACTTCTGACATTAACAAAATCATTGAGAAGTATCGTCAATGTTGCTTCAACATGTCACAGACTGAAGACTTTTTTGAACATCAATCATCACAGAACCTATACGAGGAGCTTCTGAAATTAAGAGCCAAGCATGAATCTCTTGAGAAGACACAAAGAAATTTTGAAGGGGAAGATCTAGGGCCACTTAGCATGAAAGAATTGCAGAGTCTTGAGAAACAAATTGACAGAACGCTCTCACAAGCACGACAACACCATATGCAAAAACTGCTTGCACGAATTGATGAGTTACGCCAACAGGTTCAGAATCTGGAGGGGGTTAACAAACAATTGGAAGCCAAGGAAAGGGATAAAGTGACCCACACAATTGGGGAAGGTTCTAATAACTCGACCACGTCGGTTTGCAGTTACAACCATATTAGGTTGCATGAATCTGGGACAACCTTACAACCATGTTGGTTTGGGAATCATGAGCAAGGTGGTTCAAAAGTAAGCACAAGGAGCGAGCTAGGCCAAAGCAGTCATAACAATAACAATGGATGGCTGCTTTGA 723 0.4149 MGRGRVIVERIENKISRQVTFSKRRSGLLKKAFELSVLCDAEIALIIFSSRGKLFQFSTSDINKIIEKYRQCCFNMSQTEDFFEHQSSQNLYEELLKLRAKHESLEKTQRNFEGEDLGPLSMKELQSLEKQIDRTLSQARQHHMQKLLARIDELRQQVQNLEGVNKQLEAKERDKVTHTIGEGSNNSTTSVCSYNHIRLHESGTTLQPCWFGNHEQGGSKVSTRSELGQSSHNNNNGWLL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1888 240 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan4g1888 240 Coils Coil 88 115 - -
Lan4g1888 240 Coils Coil 125 174 - -
Lan4g1888 240 PANTHER MADS BOX PROTEIN 1 188 - -
Lan4g1888 240 MobiDBLite consensus disorder prediction 217 240 - -
Lan4g1888 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan4g1888 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan4g1888 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan4g1888 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan4g1888 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan4g1888 240 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan4g1888 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan4g1888 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 188 - -
Lan4g1888 240 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lan4g1888 240 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Lan4g1888 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan4g1888 240 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1888 Lan-Chr4 27174333 27180192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1888 1 171 MADS-box Gene Family AT2G45650 53.216 5.65e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan4g1888 K-box 5.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1888 K09264 - gmx:100779279 281.952