Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1882 ATGGCTGTTGCCAAAAGCAACAGTGGCACTGATCCTTCGACTTCATACAATTGTTACAAAGTAGCAACCTTGACTGAAACCATATTAGACTCAACGCAGATCTCTAATTTGAAAGATCAATACATTCTTGGGGAGCAATTGGGTTGGGGGCAGTTTGGTGTCATAAGAGCATGTTCCGACAAATTGACTGGCGAGGTTTTGGCATGCAAATCCATTGCTAAAGATAGGTTGGTTACTTCAGATGATCTGAAGAGTGTCAAACTTGAGATTGAGATTATGGCGAGGTTATCCGGACACCCGGATGTCGTAGATCTCAAGGCAGTTTATGAAGAGGAAAATTTTGTGCATCTGGTGATGGAGCTTTGTGCTGGAGGGGAACTGTTTCACCGATTAGAGAAGCATGGGCGATTTTCAGAACATGAAGGGAGGGTTCTCTTTAGACACCTCATGCAGGTTGTTTTATATTGTCATGAGAACGGGATTGTTCATAGAGATTTAAAGCCTGAGAACATTCTCTTAGCAACTACATTCTCCTCGTCTTCAATTAAATTGGCAGACTTTGGGCTAGCAACCTACATCAAGCCTGGGCAGAGTTTGCATGGTGTAGTTGGGAGTCCATTCTATATAGCTCCAGAAGTACTTGCAGGTGCATATAACCAGGCTGCAGATGTTTGGAGTGCAGGGGTTATTATTTACATTCTACTGAGTGGGATGCCTCCTTTTTCGGGGAAGACTAAGTCACAAATATTTGAATCTGTTACGGCCGCTGGTTTGAAGTTCCCATCTGAACCTTGGGATCACATTTCTGAATCAGCCAAGGATTTGATTAGGGGAATGCTCTGCAAAGAACCTTCTCAAAGGCTCACTGCTCAGGAGGTTTTGGATCATTGCTGGATGGAAAGCAGTCAAATAAGTCATGAACAACTTGGTGAACATAAACTTGGAAGTTGTGTAGGATGGGATATGGGTGGCAACTCATTCTCTTCCTCATTTATGTCGAGGAATCAGGACATTAGCTTTGGTGCTGGATCACCTGCATGCGAAGCTCAATCACCTAGGTTCACATGCAGGGCATCATTTTCTTCTTATCTTGTGGAACCAGTTACTCCTTGTTCTGTTGCTGGTGTGTTTTCATTTCAGAGCTCAGTTGATTCCATTGGCTCGGAATTTTCTTCTCCTGTTCCATCAATGCCTAGCTTTGCATTTCTCAGCCACGACTCTGTTACTGAGCCAAGGAGTCGTATATTAGAGTTCTCAACTAACAAATCAGATGTTAAGGAAATTGCTGGAGATTCTCCCCTTTGCATTGGAGACGATGTTATAGAAATGGGTCGAAAGCATGGAACAAATGGGCATAGGGCATTGGGATTCCACAGCAAGATGAATCGGACGATTGGACTTGGGGAGTGCGAGCAACTCGATCTTGTAGTAACGGAATCAGTCATGCGCTGGTCATCATGCACACAACTTCCTACAACGCTTGGATCATCTCTGGTGTATTAA 1503 0.4385 MAVAKSNSGTDPSTSYNCYKVATLTETILDSTQISNLKDQYILGEQLGWGQFGVIRACSDKLTGEVLACKSIAKDRLVTSDDLKSVKLEIEIMARLSGHPDVVDLKAVYEEENFVHLVMELCAGGELFHRLEKHGRFSEHEGRVLFRHLMQVVLYCHENGIVHRDLKPENILLATTFSSSSIKLADFGLATYIKPGQSLHGVVGSPFYIAPEVLAGAYNQAADVWSAGVIIYILLSGMPPFSGKTKSQIFESVTAAGLKFPSEPWDHISESAKDLIRGMLCKEPSQRLTAQEVLDHCWMESSQISHEQLGEHKLGSCVGWDMGGNSFSSSFMSRNQDISFGAGSPACEAQSPRFTCRASFSSYLVEPVTPCSVAGVFSFQSSVDSIGSEFSSPVPSMPSFAFLSHDSVTEPRSRILEFSTNKSDVKEIAGDSPLCIGDDVIEMGRKHGTNGHRALGFHSKMNRTIGLGECEQLDLVVTESVMRWSSCTQLPTTLGSSLVY* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1882 500 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Lan4g1882 500 SUPERFAMILY Protein kinase-like (PK-like) 39 300 IPR011009 -
Lan4g1882 500 CDD STKc_CAMK 40 298 - -
Lan4g1882 500 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1882 500 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1882 500 Pfam Protein kinase domain 43 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1882 500 Gene3D Transferase(Phosphotransferase) domain 1 128 317 - -
Lan4g1882 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Lan4g1882 500 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 34-LIKE 7 493 - -
Lan4g1882 500 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Lan4g1882 500 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1882 Lan-Chr4 27145651 27148518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1882 25 308 EF-hand Containing Proteins AT5G04870 49.648 1.48e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan4g1882 Pkinase 2.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1882 - - gmx:100776088 770.77