Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1880 ATGTTTCCCTTCAATCATTTCGATTTTCTTGACCAACATCCAAGTTACCCCGATACTTCCTCTTCTTCACCGGTTTCGGAGGGTGGCAGTGCTTTTCATTCGGCGGCGATCTCCAGTGAGGAGGTGTTATTGGCTTCGAACAACCCCAAGAAGCGTTCTGGGAGGAAGAATTTCAAGGAGACACGCCACCCGGTGTACCGGGGCATTCGGCGGAGGAACACCGATAAGTGGGTGTGTGAAGTTCGTGAACCTAATAAGAAGAGCAGGATTTGGCTTGGGACATTCCCCACGGCGGATATGGCAGCGCGTGCTCACGACGTGGCTGCGATTGCTCTAAGGGGAAAGTCCGCGTGCCTTAATTTTGCGGATTCCGCGTGGAGACTTCCGGTGCCGGCTTCGTCGGAGCCAAGTGATATCCAGAAGGCCGCAGCGGAAGCGGCAGAGGCATTTCGGCCGGGAACGGAGGAAGGAAATTTGGGTAATGAGTCAGAAGTAACAGCGGTGGAGACGATGGTGGAGGCGCAAGAGGAAGAGTCATCATCGGTGCCGGAGTGGTTGAGGGAGATGGTGTTCATGTCGCCAACACATTACAGCTACAGCATGGGAAGTGAGTACTATACTGATGACGTGGACTTTGATGATGTTGAAATCTCATTGTGGAATTATTCTATTTAA 675 0.5215 MFPFNHFDFLDQHPSYPDTSSSSPVSEGGSAFHSAAISSEEVLLASNNPKKRSGRKNFKETRHPVYRGIRRRNTDKWVCEVREPNKKSRIWLGTFPTADMAARAHDVAAIALRGKSACLNFADSAWRLPVPASSEPSDIQKAAAEAAEAFRPGTEEGNLGNESEVTAVETMVEAQEEESSSVPEWLREMVFMSPTHYSYSMGSEYYTDDVDFDDVEISLWNYSI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1880 224 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Lan4g1880 224 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Lan4g1880 224 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Lan4g1880 224 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Lan4g1880 224 SUPERFAMILY DNA-binding domain 65 124 IPR016177 GO:0003677
Lan4g1880 224 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Lan4g1880 224 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Lan4g1880 224 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 11 224 - -
Lan4g1880 224 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Lan4g1880 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 224 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1880 Lan-Chr4 27141728 27142679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1880 37 222 AP2-EREBP Transcription Factor Family AT1G63030 52.406 1.07e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan4g1880 AP2 5.9e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0811 8 10046426 10047300 Lan4g1880 4 27141728 27142679 LSH