Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1877 ATGAGGCCTATCTTCTGTGGGAATTTAGAACATGATGCCCGGTCATCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGATTGAAAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTACATGGAAGATGATAGAGATTCTGAGGCTGCAATTCGTGCTCTTGATCGGGCAGAATTTGGCCGGAAGGGGCGCAGACTTCGTGTTGAATGGACAAAGCAAGAACGTGGTGTTAGAAGGCCTGCTCCAAGTTCAAGATCTTCAGGGAATGGGAGGCCCTCAAAGACCTTATTTGTGATTAATTTTGATGCATACCAGACAAGAACAAGGGACTTGGAGAGGCACTTTGAGCCGTATGGTAAGATAGTCAGTGTGAGGATCAGAAGAAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGGGCATTGGAAGCTACAAATATGAGCAAATTGCTGGATAGAGTTATTTCAGTTGAATTTTCTGTTAAAGATGATGATAGGCGGAATGGATACAGCCCTGAGAGAGGCCATGGTCGACAAGGCTATAGAAGCCGTGATGGAAGGCGATCACCCAGTCCTTATCATAGAGAAAGGGGTAGTCCTAATTATGGCCGTGGACCCAGTCCATATAAGAGGGAGAGGAGCAGCCCGGACTATGGTCATGGCCGTAGCCGTAGCCGAAGTCCCCTTCAAAGAGACCGTGTGAGCCCTGCTTATGTGCGTAGAAGCCCTAGTCCATATAGAAGAGAGAGGAATGGGTCTGACCCTAATCGTGGCTTAAGCCACAGTCCTTATCACAAAGAGCAGGTAAGAACTGGTGACCGTGGCATCTCTCCCCCCCATAATAATAGTCATGAGGGCAGAGAGAAAACAAGTCCTCAAAATGGTCGAGGTTCTAGCCGTAGTCCTTATGATGTGGACAAGGTGGCAAGCCCTGAAAATCGCCATGGCTCCAGGCATAGTCCTGAAGAAGAAGGGGCCATCATCAGCCCTTACAATGGTTATGGAGGGAGCCCTACTACTATGCCTGAAAGTCCTGGGCATGAACGATACCACAGCCAGTCCCCTCCTGCAGAAGAATGA 1092 0.4799 MRPIFCGNLEHDARSSELERLFRRYGKIERVDMKSGFAFIYMEDDRDSEAAIRALDRAEFGRKGRRLRVEWTKQERGVRRPAPSSRSSGNGRPSKTLFVINFDAYQTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFSVKDDDRRNGYSPERGHGRQGYRSRDGRRSPSPYHRERGSPNYGRGPSPYKRERSSPDYGHGRSRSRSPLQRDRVSPAYVRRSPSPYRRERNGSDPNRGLSHSPYHKEQVRTGDRGISPPHNNSHEGREKTSPQNGRGSSRSPYDVDKVASPENRHGSRHSPEEEGAIISPYNGYGGSPTTMPESPGHERYHSQSPPAEE* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1877 363 MobiDBLite consensus disorder prediction 311 326 - -
Lan4g1877 363 MobiDBLite consensus disorder prediction 214 233 - -
Lan4g1877 363 SUPERFAMILY RNA-binding domain, RBD 4 92 IPR035979 GO:0003676
Lan4g1877 363 PANTHER BNAC08G47240D PROTEIN 4 363 - -
Lan4g1877 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Lan4g1877 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Lan4g1877 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Lan4g1877 363 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 363 - -
Lan4g1877 363 SUPERFAMILY RNA-binding domain, RBD 80 175 IPR035979 GO:0003676
Lan4g1877 363 SMART rrm1_1 96 162 IPR000504 GO:0003723
Lan4g1877 363 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lan4g1877 363 Gene3D - 1 84 IPR012677 -
Lan4g1877 363 MobiDBLite consensus disorder prediction 73 94 - -
Lan4g1877 363 Gene3D - 85 199 IPR012677 -
Lan4g1877 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lan4g1877 363 MobiDBLite consensus disorder prediction 168 198 - -
Lan4g1877 363 MobiDBLite consensus disorder prediction 168 363 - -
Lan4g1877 363 MobiDBLite consensus disorder prediction 247 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1877 Lan-Chr4 27129172 27133107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1877 4 212 Eukaryotic Initiation Factors Gene Family AT2G23350 25.862 1.87e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1877 K12893 - gmx:100796509 546.969