Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1867 ATGGGGTGCCAGGTACTAGAAAAGGGAAAACAAAAACATAGGAAGGGATTATGGTCACCTGAAGAAGACAATAGGCTTAGAAACTATATCCTTAAGCATGGTCATGGTTGTTGGAGCTCTGTTCCTATTAAGTCAGGGTTGCAAAGGAATGGAAAGAGCTGCAGATTAAGATGGATTAACTATTTAAGGCCAGGATTAAAGAAAGGTGTGTTCACCAAACAGGAGGAGGAGACTATCCTCACCCTTCACAACATGTTAGGAAACAAGTGGTCTCAGATTGCAAAACATTTACCAGGAAGAACTGACAATGAGATAAAAAACTACTGGCACTCATATCTGAAAAAGAGAATGGTGAAAGCTAAGGAAATGGAATCTCATAAGGAAATTCAGTATGCAACCTCAAGCTCAGATACCTTGAACTCTTCACCTCCTCTTCAAAAACTTGCAACACAAGGCACACATAATATAAACTTCACCATAGAGCCAACAAATCAAAGCTCCTTACCAAAACTATTATTTGCTGAATGGCTTTCAGTTGATCATGTAAATGGTGGAAACTCTTCTAATTCATTTGAGTCTTTACCCTTGAGGAATGGATTTGATCAAAATCCAACTTTACATGAAGCTTCAATGCAGCATTATATGTCAGAAGCACCCTTTGATGGAGGAGAGTATCATGATAATAGTCTAACTCAAATTTCAGAAACTGAGATGTTCAATTCACAGCTTAAATTTGGAAATCAAATGGTGACAAATGGATTCATCCATTGTATACCTGGGAATGATTTAAGTAGCAATTTCAGCCTAAACAATGATGCAATGTACTCATGA 831 0.3767 MGCQVLEKGKQKHRKGLWSPEEDNRLRNYILKHGHGCWSSVPIKSGLQRNGKSCRLRWINYLRPGLKKGVFTKQEEETILTLHNMLGNKWSQIAKHLPGRTDNEIKNYWHSYLKKRMVKAKEMESHKEIQYATSSSDTLNSSPPLQKLATQGTHNINFTIEPTNQSSLPKLLFAEWLSVDHVNGGNSSNSFESLPLRNGFDQNPTLHEASMQHYMSEAPFDGGEYHDNSLTQISETEMFNSQLKFGNQMVTNGFIHCIPGNDLSSNFSLNNDAMYS* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1867 276 CDD SANT 18 62 IPR001005 -
Lan4g1867 276 CDD SANT 71 113 IPR001005 -
Lan4g1867 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan4g1867 276 PANTHER MYB TRANSCRIPTION FACTOR 1 270 - -
Lan4g1867 276 PANTHER MYB DOMAIN PROTEIN 55 1 270 - -
Lan4g1867 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Lan4g1867 276 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lan4g1867 276 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan4g1867 276 SMART sant 67 115 IPR001005 -
Lan4g1867 276 SMART sant 14 64 IPR001005 -
Lan4g1867 276 Gene3D - 70 140 - -
Lan4g1867 276 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Lan4g1867 276 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Lan4g1867 276 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lan4g1867 276 Gene3D - 15 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1867 Lan-Chr4 27072552 27074767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1867 8 208 MYB Transcription Factor Family AT3G48920 54.187 9.48e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan4g1867 Myb_DNA-binding 5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1867 K09422 - gmx:778167 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0801 8 9993602 9995733 Lan4g1867 4 27072552 27074767 LSH
Lan20g0048 20 260063 262681 Lan4g1867 4 27072552 27074767 LSH