Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1866 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGAGTGAAGAAGGGAGCTTGGACTCCTGAAGAAGACAAAACCTTAGTTGATTACATCAACAAACATGGTCATGGTAGTTGGCGTACACTCCCAAAACATGCAGGTCTTCTGCGTTGTGGAAAAAGTTGTCGCCTTCGGTGGATAAATTATCTTCGCCCTGATATCAAGCGTGGTCCATTTACTAATGAAGAAGAAACTACTATCATTCAACTTCATGCCATGCTTGGTAACAGGTGGGCTGCTATTGCATCCCAACTACCTGGGAGAACAGACAACGAGATTAAGAACTATTGGAACACGCATCTTAAGAAGCGACTGTTTGGGTCAGATGATTGTCTAATAAGTGCAAAAAAGGTGCATGTAAGTCCTGATTTGAAGATTGTGAAGTCTGAATCTCCTTGTACAGGTCACATGGCTCAATGGGAAAGTGCTAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCTTCATTCCTTAATTCTTCCTCAACAACTAATCAAACATACAACGATTGCTATCTTCAACTTTGGCATTCTGAGGTCGGACACTCGTTTCGCACTATTAAGGGAAAGGAGGAAGAAGGAGTAGTATCATCCTCATCATTGAAGATGAAACAGGTGGAAAAAGCTAGTACTTTTGCTAAAATGACTCAACAACAAGCATCTTGCTACAAACCAAAACTTGAAGATGATGATGATGATGGCACAAGTGGTGGGACAGAGTCAGGAAATTGTGAATTTTTTTATGCTTGTGATTCTGCAATAAAGCACCTATTAGATGTGCCTGGTGCTGATATAGGATTCTGGGACACACTTACAGTTTCCTAG 858 0.4149 MGKAPCCEKHGVKKGAWTPEEDKTLVDYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPDIKRGPFTNEEETTIIQLHAMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRLFGSDDCLISAKKVHVSPDLKIVKSESPCTGHMAQWESARVEAEARLSMESSFLNSSSTTNQTYNDCYLQLWHSEVGHSFRTIKGKEEEGVVSSSSLKMKQVEKASTFAKMTQQQASCYKPKLEDDDDDGTSGGTESGNCEFFYACDSAIKHLLDVPGADIGFWDTLTVS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1866 285 CDD SANT 69 112 IPR001005 -
Lan4g1866 285 Gene3D - 13 66 - -
Lan4g1866 285 CDD SANT 16 61 IPR001005 -
Lan4g1866 285 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 280 - -
Lan4g1866 285 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan4g1866 285 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan4g1866 285 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan4g1866 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan4g1866 285 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 280 - -
Lan4g1866 285 Gene3D - 69 116 - -
Lan4g1866 285 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan4g1866 285 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan4g1866 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan4g1866 285 SMART sant 66 114 IPR001005 -
Lan4g1866 285 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1866 Lan-Chr4 27068219 27069702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1866 1 275 MYB Transcription Factor Family AT3G61250 50.519 1.15e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan4g1866 Myb_DNA-binding 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1866 K09422 - gmx:100782075 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1086 8 14117016 14121686 Lan4g1866 4 27068219 27069702 LSH
Lan20g0049 20 263907 266194 Lan4g1866 4 27068219 27069702 LSH