Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1858 ATGGCAATTGGAAGATTCACTGACTCTGGCACTCCCCATGTAACGGAAACAGAGGACATCGATGATTCTTTAGATAATGTAACAAGAAAAGACTCTTCACTTTCTTCCCCTAGGGCTGGTGACAACCCTGTACAATGGGTTCAATTTCTTAAGACTTTTGATGAACCAGAACCTTCAGGTCGGCCTTTCTTATATCCTGGGAAGATTCAGATGCAGAAGTGCGACAAGTGTTCTCTAGAGTTTTGCTCTCCCATTAACTATAGAAGACATAACCGTGCTTATCATCGGTCGAAAAAGCATGACAAGGAATCCAAAATAAATAGGGATCTTTTAGGGGAATATTGGGATAAGCTTTCTGTAGAAGAGGCAAGTGAAGTTGTATCATTCAGGAATGTGGAGCTGGAGGAAGTTCCAGGGTCTTTGATTTTAAATGCTCTCTCGACTCTTATTAAAAATCAAACATTTTCCCCTCTACCACAGTATTACTATTATCTGAGGGCTGGTTCTGCCTTTCTGGATATTATTGACTCTAGGTCTTCCAATTTTCCTATATCTTCCCAAGTTTTGTTCCATATTCTTGACGATTCCAGTGAGAAAACATTTTTATGCGGGTCAGCAATGTCGATGCAAAGATATGTTTTTGATGGAGATGCTCGAAGGATTTGTCTTGAGCCAAAAAACATAGTTGCTTGTACAAGTTTCTTGCTAGAGCAGAAATTGGCAAAGGCATGGCTTGCTGACAAGGATGCTGAAGCATTGAGGTGCCAGAATCTGCTGATGGAAGAAGAAGATGCTGCTCAGAGAAGACAAACTCGAATTTTGGAGAAGAAACACAAGAAAAAGCTTAAAAAGCTTAAACAAAAAGAACAGAAGGCGACGGAACAACTTGAAGCTGATACAGAAATTAAAGAGAATAACAGAAGCACAGTGGAGGCTTTATCGCCAGCAGAAGTATCTCTGGATACACATGACTTTGAAGTACATGATCCAGATACAGTTGTGAGTCATGCTCCTTCACCACATGTAACTTTTCACTGCCCAGAGACTACTGAAGTTGTAGATAGGGATCCACAGTCGAATAATGATTGTGAGACTCACCAGAATATTGAGCAACAGAGGTCACAAGGACATAATCGCCAGTGCTTGACAGTTGCCAGACGGCATGGGCTGCAAAAATCTCAAAGGGCTGTTGCCAATGGTTCAGGTGTAAGCCAGAATTCTCAAACTTCAAAGCTTGAAGTCATTCAGAAATGTGGTACCCTCCATGAACAAAAGGCAGATCCTATTGTTGAAGTTAGTAAAGTCTGGACTCAAAAGCCTAAACCAGAAATTGGTAGGGTGATGTCAGAAGCCAGACTGCAGAAAGAACCAGAGCAAGGTAAAAAACATGAAATTTTGATAGGATCTATATCTATTCCTCTTGGAAATTGCAGCCAATCAGAAGGTAATCTTGTGGCATCACATGCGGATTGCATGGGAGTGAACCTTTCCGAGCATAATAGTGCTCAGGAGAAGCCAATGAAAACCGATTCCTCCCAGAGTGGCAACCCAGTTAAGCTTTGGAGGCCAGTTAGCCAGCATGGAACCAAAGATCAATTGCCACTCCAAAGTGGCGGGACTGAAGCTGATGCAGTTAATAGAAAAAATTATCAAACTTTGTCAGGTCAAAGTAGTTTAAGGTTGAGTGATATAGACGGTAATGATATTGGTTCCAGGAACAACATCTCCAATCCTTGGGCTGAAGTAGATCCAACAAACTTCCGGTTATCCACCCATGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAAGAGGCTATCTCATCAGACCATGTGGATTTGGTTGTTTCACTTGATTCTGAACCTCCTGGATGCCAGGAGGTGCAGGATTATGAATTAGAAACAGGTCGATCTTCTGATGCTGACAAATGTAGCAGTCTTGCACGTGCAGAGAACCCATTGCCTGCAACAGCCGGAGTTACTAAATCCATACCCAGAATGAATCCTGGAAAGGGAAGCAAGATGAAGTACATTCCTAAACAAAAACCAGCTACTTAG 2055 0.4204 MAIGRFTDSGTPHVTETEDIDDSLDNVTRKDSSLSSPRAGDNPVQWVQFLKTFDEPEPSGRPFLYPGKIQMQKCDKCSLEFCSPINYRRHNRAYHRSKKHDKESKINRDLLGEYWDKLSVEEASEVVSFRNVELEEVPGSLILNALSTLIKNQTFSPLPQYYYYLRAGSAFLDIIDSRSSNFPISSQVLFHILDDSSEKTFLCGSAMSMQRYVFDGDARRICLEPKNIVACTSFLLEQKLAKAWLADKDAEALRCQNLLMEEEDAAQRRQTRILEKKHKKKLKKLKQKEQKATEQLEADTEIKENNRSTVEALSPAEVSLDTHDFEVHDPDTVVSHAPSPHVTFHCPETTEVVDRDPQSNNDCETHQNIEQQRSQGHNRQCLTVARRHGLQKSQRAVANGSGVSQNSQTSKLEVIQKCGTLHEQKADPIVEVSKVWTQKPKPEIGRVMSEARLQKEPEQGKKHEILIGSISIPLGNCSQSEGNLVASHADCMGVNLSEHNSAQEKPMKTDSSQSGNPVKLWRPVSQHGTKDQLPLQSGGTEADAVNRKNYQTLSGQSSLRLSDIDGNDIGSRNNISNPWAEVDPTNFRLSTHAAKAFLAQRWKEAISSDHVDLVVSLDSEPPGCQEVQDYELETGRSSDADKCSSLARAENPLPATAGVTKSIPRMNPGKGSKMKYIPKQKPAT* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1858 684 MobiDBLite consensus disorder prediction 1 40 - -
Lan4g1858 684 MobiDBLite consensus disorder prediction 12 28 - -
Lan4g1858 684 ProSitePatterns Zinc finger C2H2 type domain signature. 74 95 IPR013087 -
Lan4g1858 684 MobiDBLite consensus disorder prediction 277 303 - -
Lan4g1858 684 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 5 682 - -
Lan4g1858 684 MobiDBLite consensus disorder prediction 287 303 - -
Lan4g1858 684 Coils Coil 268 306 - -
Lan4g1858 684 MobiDBLite consensus disorder prediction 633 684 - -
Lan4g1858 684 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 100 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1858 Lan-Chr4 27020412 27027108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1858 18 681 C2H2 Transcription Factor Family AT4G25610 35.704 1.47e-110 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan4g1858 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1858 - - gmx:100799153 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1097 8 14311906 14319276 Lan4g1858 4 27020412 27027108 LSH
Lan7g0956 7 9319459 9327163 Lan4g1858 4 27020412 27027108 PCT
Lan8g1097 8 14311906 14319276 Lan4g1858 4 27020412 27027108 PCT
Lan4g1858 4 27020412 27027108 Lan7g0956 7 9319459 9327163 PCT
Lan4g1858 4 27020412 27027108 Lan8g1097 8 14311906 14319276 PCT