Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1831 ATGGCAGATCTTGTTAGCTACGGGAATGTCGACCGTGACATTCACCAGGCATTGATTGTTTTGAAAAGGGGTGCTCAACTGCTTAAATATGGTCGTAAGGGAAAAACTAAGTTTTGTCCATTTAGACTTTCAAATGATGAGTCATCTTTAATCTGGATTTCGAGTAGTGGAGAAAGAAGTCTGAAGCTATCTTCTGTCTCTAGAATTATTTCCGGTCAAAGAACTGCTGTTTTCCAAAGTTATCCGCGTCCTGAGAAGGACCATTTATCTTTTTCACTTATTTATTACAACGGGAAGCGATCCCTTGACTTGATTTGCAAGGATAAAGTTGAGGCAGACGTGTGGATTGCTGGTCTCAGAGCACTAATATCATCTGGTCAAGGTGGGCGCTCCAAAATTGATGGATGGAGTGATGGGGGCTTATATTTTGATGATAGTAGAGATTTAACATTAAGTAGGACTAGTGATAGTTCAGCTAATGCTTCACTAGACATCAGTTGTCCTGACTTTTCTGTGATTCTGCCGAATACTTCTCCAAAGCCCTTCCAGCCTAAGAATACCTTAAATTTTGAAACGTTACATGCACCACCAAACCCATCAAATATGCAAGTGAAAGGATCAAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCTCCCAGCACGTCCAGTCAGGGCTCTGCACCAGATGATTATGATGCCCTTGGGGATGTATACATTTGGGGGGATGTTATCTGTGAGAACATTGTAAAAGTCGGTGCTGATAAAAGTGTCAGTTATGTCAGCCCGAGGGCAGATGTTCTCCTCCCTCGGCCACTGGAGTCCAATGTAATTTTAGATGTACTTCAAATAGCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAAATTTTTACGTGGGGTGAAGAATCTGGAGGATGCCTTGGCCACGGTGTTGGGAAGAATGTGATTCAACCTCATCTAGTTGAAGCACTGGCTTCTTCAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCCGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGGTACCAAAGAGAATTGCAGGTCCACTAGAGAGGCTTCAAGTTGCTTTAGTCACTTGTGGTCCATGGCATACTGCGTTGATAACTTCAACCGGGCAGCTCTTTACATTTGGTGATGGGACATTTGGTGTCCTGGGCCATGGAGACAGGGAAAATGTTTCATATCCTCGAGAAGTTGAATCCTTATCTGGGTTGAGGACAATAGGTGTTGCGTGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGTGACACAATCCAGCACGTCATCAGGTAAATTGTTTACTTGGGGAGATGGAGATAAAAATCGCCTTGGACAAGGCGACAAGGAGGCCCGACTGGAACCAACATGCGTGCCTTCACTTATCGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACGGTCGGCCTGACTACATCTGGACATGTTTTTACAATGGGGAGCACTGTTTACGGTCAGCTTGGGAATCCTCAGTCTGACGGGAAGCTTCCGTGTTTGGTTGAAGACAAACTTTCTGGAGAATACGTTGAAGAAATTGCATGTGGAGCATATCATGTCGCCGTTTTAACATCCAAAAATGAAGTTTATACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGTGATGTTGAAGATCGGAAAACACCAACTCTGGTTGAAGCTTTGAAGGATAGACATGTGAAATACATTTCATGTGGTTCAAACTACTCTGCCGCTATATGCCTCCATAAGTGGGTATCTGGTGCTGAACAGTCTCAGTGTTCTACTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTACAATTGTGGACTTGTGCACTGTCATTCTTGCAGTTCAAGGAAAGCATTAAGAGCAGCTCTGGCTCCTAATCTGGGGAAGCTATATCGTGTTTGTGATTCTTGTTATGCAAAATTGAATAAGGTTGCAGATGCTAGCAACAATAATCGGAGGAATGCTTTGCCACGATTGTCGGGCGAAATCAAAGACAGGTTAGATAAGTCTGAGATAAGACCGTCAAAGTTACCAGTTCCCTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCAAAACAAGGGAAGAAGGCTGATACGTTCTCTCTGGTTCGGACCACACAAATAACTTCTTTGCTACAGATGAAAGATGTCTTCTCTACTCCTAATAATGATCTGAAAAGAACACTCCCAAGACCTGTTCTTCCATCATCTAGAGTGAGCTCCAGGTCTGTCTCCCCTTTCTCTAGAAAATCGAGCCCCCCTCGTTCAGCTACACCTATTCCAACAACACAAGGACTTTCCTTCTCAAAAAATGTTACTGATAGTTTGAAGAAAACAAATAAAATTTTGAACCAAGAAGTGGTGAAGTTACGTTCTCAGGTTGAGACCCTGAGGCAGAGGTGTGAACGGCAAGAATTAGAGATTCAAAGGTCAACAAAAAAGACTCAGGAAGCTATCACATTGGCTGCTGAGGAATCTTCCAAGTCCAGGGCTGCAAAAGAAGTCATAAAGTCACTTGCAGCACAGCTCAAAAATCTGGCTGAGAGGCTTCCTCCGGGTGTTTATGATGCCAAGAACATCAGACCAGCTCACCAACCGAATGATCTGGAGCCAAACACCCATTATCCGGACTCAAATAGGGAGCGTCTTGTGAGGGCAGAGTCGATCAGCGACTCTAGTTTGGCTTCCATGGGACTTGAATCTTCTCTGATGAATAGAACGAAGGGGAATTTACCAGGAAGCCATGGAACAAATCTCTACCAACAAAAACCGGGGCTGGTGACCTCTAACAGGAGAGATGATGACTCCGATGCTAAATTGACAAATGGCAGTGGTATGATTCAGGCAAGAGACAGTGGCGTGTCAGACACTACTGTTGATGGTAGGGATTCTGGGAATTTCCAAGACGATGAGAGCAGTTTGGCATCACGGAATTCCGATAGCAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACACTCACTGCTCTGCATGATGGAACCCGTGATCTGAAGCGAGTGCGCTTTAGCCGAAGAAGATTTGGAGAGCACCAAGCAGAGATTTGGTGGTCAGAGAACCGTGACAAAGTATACAAAAGGTACAGTGTTCGTATAACCGAAAAGTATTCCAGCCAAGCAGCACACAATGGTAGTTCAGCTGTTTCAGAATCATAG 3339 0.4412 MADLVSYGNVDRDIHQALIVLKRGAQLLKYGRKGKTKFCPFRLSNDESSLIWISSSGERSLKLSSVSRIISGQRTAVFQSYPRPEKDHLSFSLIYYNGKRSLDLICKDKVEADVWIAGLRALISSGQGGRSKIDGWSDGGLYFDDSRDLTLSRTSDSSANASLDISCPDFSVILPNTSPKPFQPKNTLNFETLHAPPNPSNMQVKGSSSDVFRVSVSSAPSTSSQGSAPDDYDALGDVYIWGDVICENIVKVGADKSVSYVSPRADVLLPRPLESNVILDVLQIACGVKHAALVTRQGEIFTWGEESGGCLGHGVGKNVIQPHLVEALASSTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWVPKRIAGPLERLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIGVACGVWHTAAVVEVIVTQSSTSSGKLFTWGDGDKNRLGQGDKEARLEPTCVPSLIDYNFHKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKLPCLVEDKLSGEYVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYISCGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNLGKLYRVCDSCYAKLNKVADASNNNRRNALPRLSGEIKDRLDKSEIRPSKLPVPSNMDLIKQLDSKAAKQGKKADTFSLVRTTQITSLLQMKDVFSTPNNDLKRTLPRPVLPSSRVSSRSVSPFSRKSSPPRSATPIPTTQGLSFSKNVTDSLKKTNKILNQEVVKLRSQVETLRQRCERQELEIQRSTKKTQEAITLAAEESSKSRAAKEVIKSLAAQLKNLAERLPPGVYDAKNIRPAHQPNDLEPNTHYPDSNRERLVRAESISDSSLASMGLESSLMNRTKGNLPGSHGTNLYQQKPGLVTSNRRDDDSDAKLTNGSGMIQARDSGVSDTTVDGRDSGNFQDDESSLASRNSDSNQIEAEWIEQYEPGVYITLTALHDGTRDLKRVRFSRRRFGEHQAEIWWSENRDKVYKRYSVRITEKYSSQAAHNGSSAVSES* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1831 1112 MobiDBLite consensus disorder prediction 990 1029 - -
Lan4g1831 1112 SUPERFAMILY PH domain-like 13 123 - -
Lan4g1831 1112 Coils Coil 878 898 - -
Lan4g1831 1112 MobiDBLite consensus disorder prediction 953 976 - -
Lan4g1831 1112 Coils Coil 822 863 - -
Lan4g1831 1112 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Lan4g1831 1112 MobiDBLite consensus disorder prediction 783 816 - -
Lan4g1831 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 571 618 IPR000408 -
Lan4g1831 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 517 566 IPR000408 -
Lan4g1831 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 465 512 IPR000408 -
Lan4g1831 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 350 401 IPR000408 -
Lan4g1831 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Lan4g1831 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Lan4g1831 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Lan4g1831 1112 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 626 688 IPR017455 -
Lan4g1831 1112 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Lan4g1831 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 570 621 IPR000408 -
Lan4g1831 1112 CDD PH_PLC_plant-like 12 124 - -
Lan4g1831 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Lan4g1831 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Lan4g1831 1112 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Lan4g1831 1112 MobiDBLite consensus disorder prediction 905 928 - -
Lan4g1831 1112 SMART fyve_4 620 689 IPR000306 GO:0046872
Lan4g1831 1112 CDD FYVE_like_SF 631 684 - -
Lan4g1831 1112 SUPERFAMILY RCC1/BLIP-II 235 623 IPR009091 -
Lan4g1831 1112 PRINTS Chromosome condensation regulator RCC1 signature 281 294 IPR000408 -
Lan4g1831 1112 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Lan4g1831 1112 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Lan4g1831 1112 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Lan4g1831 1112 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Lan4g1831 1112 PRINTS Chromosome condensation regulator RCC1 signature 507 525 IPR000408 -
Lan4g1831 1112 PRINTS Chromosome condensation regulator RCC1 signature 565 586 IPR000408 -
Lan4g1831 1112 Gene3D - 198 361 IPR009091 -
Lan4g1831 1112 SUPERFAMILY FYVE/PHD zinc finger 622 696 IPR011011 -
Lan4g1831 1112 Pfam Transcription factor BRX N-terminal domain 873 908 IPR027988 -
Lan4g1831 1112 MobiDBLite consensus disorder prediction 769 816 - -
Lan4g1831 1112 Gene3D - 362 634 IPR009091 -
Lan4g1831 1112 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1095 - -
Lan4g1831 1112 Gene3D - 13 129 IPR011993 -
Lan4g1831 1112 ProSiteProfiles BRX domain profile. 1035 1090 IPR013591 -
Lan4g1831 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 297 IPR000408 -
Lan4g1831 1112 Pfam Transcription factor regulating root and shoot growth via Pin3 1034 1089 IPR013591 -
Lan4g1831 1112 Pfam FYVE zinc finger 622 688 IPR000306 GO:0046872
Lan4g1831 1112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 695 IPR013083 -
Lan4g1831 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 518 569 IPR000408 -
Lan4g1831 1112 MobiDBLite consensus disorder prediction 953 1029 - -
Lan4g1831 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 466 517 IPR000408 -
Lan4g1831 1112 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 284 294 IPR000408 -
Lan4g1831 1112 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1095 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1831 Lan-Chr4 26862747 26887772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1831 882 1101 Major Intrinsic Protein MIP AT1G31880 28.700 2.00e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1831 - - gmx:100811999 1797.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0769 8 9842068 9848894 Lan4g1831 4 26862747 26887772 LSH
Lan20g0080 20 432415 443648 Lan4g1831 4 26862747 26887772 LSH
Lan7g0998 7 9977418 9985312 Lan4g1831 4 26862747 26887772 PCT
Lan4g1831 4 26862747 26887772 Lan7g0998 7 9977418 9985312 PCT