Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1824 ATGCAGCTGGGAAACCCAACCGTGTTGGAAGCCTCCTCCGGCGAGGCCGTGGCGGTGCATGACGGTGCCAACGGGGGCAGTGAAGAGAAGGGAATTATAAGAGATGATAGTAGTGGCGGTGGCGGTGCTGGTGATGGTGATGGAGATGAGAGTCATGAGAAAATGAACGGTGGAGGAAACCGGTGGCCCCGCCAAGAAACATTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCTGTGTTTCGTGATTCAAGTCTTAAGGGTCCACTTTGGGAAGATGTTTCAAGGAAACTAGCTAGTCTTGGTTATCACCGAAGTGCAAAGAAATGCAAGGAAAAATTTGAGAACGTGTACAAGTACCACAAGAGAACAAAAGAAAGCAGAAGTGGGAAATCAGAAGGAAAAACATATAGATTCTTTGATCAATTACAAGCCCTTGAGAAACAATTCAATGTCTCTTCTTACTCGCCAAAACCACAACCTACTTTTGCAACAACAAACAACAACACTGTGTCATTGCCAACAAAGCCTAGTGATACCAATACACCAATCTCTTTTAATTCCATCACCACTGTTCCATCCACAAACCCTACACTCATTTCTCCACCTCCACCACCATTACCACTACCAACCAATTCTACCACTAATATCACTTTCACAACAACAACTATGGTAACCAACCCTAGCAATGATAATAATAATAACAACAACAACAACAACAATGTTTCGTATTCTTTGCCATACATGAACCTTTTCTCTACCTCTTCTTCTACATCTTCTTCCACGGCTTCCGACGAAGACTTGGAAGAAAAGTACCGGAAGAAGAGGAAATGGAAGGACTACTTCCGAAGGCTCACAAGGCAGGTCTTAGCCAAGCAAGAGGAAATGCAGAAGAAGTTCTTGGAAGCGATCGATAAAAGGGAGAGGGAACATATGGTGCAACAAGACGCTTGGAGGATACAAGAGATGGCAAGGATCAATAGAGAACATGAGTTACTTGTACAAGAAAGAACAACTGCTGCAGCAGAAGATGCTGCAGTTGTTAAATTTTTGCAGAAGTTGTCTGGTCAGCAAAACCCTACAACACAACCTTTTGATCAAACAATTTCTGCAAAAATAATATCGCCACCACTAGTATCACAAGTGGTACAACCTCAACCACAACAACAGCATCATCAGTTATCATTGATGGTAATGAACAACAACGTTGAAATCCAGAAAACAAGTAATGGTCATAATAGTGGTGATCCATTAAACTCTCCTTCTAGGTGGCCAAAGGCAGAAGTTCATGCTTTGATAAGGTTGAGGACGAGTCTTGATGCTAAGTATCAAGAGAATGCACCAAAAGCTCCATTTTGGGAGGATATATCAGCTGGGATGCAAAGGCTTGGGTACAATAGGAGTGCTAAGAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAAAAGGTGAAGGAAAGTAACAAGAAAAGGCGCGAGGATAGTAAAACTTGTCCCTATTTTGAAGAGCTTGATGCTCTATACAAAGAAAAGAGCAAAACTCATAACCCCTTTGGTGGTGTTACTTCTGCATTCAACAACGTTAATCCAAATGAGATGATGGAGCCATTGATGGTGCAACCAGAACAGCAATGGAGGCCACCCTCTCATGATGAGAATAATGAAAGTCAAAAAAGAGAAAGGGAAGAGGTAGCAGATGAAGGAGATAGCATGGAAGATGATAACGTGGATGATGATGGTGAAGAAGATAGAGATAGCATGGAAGATGAAGAAGGAAGAGGTAATCATTATGAGATTGCGACAAATACACTTCCTTCAGTGGACATAGTTGAATGA 1842 0.4218 MQLGNPTVLEASSGEAVAVHDGANGGSEEKGIIRDDSSGGGGAGDGDGDESHEKMNGGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEDVSRKLASLGYHRSAKKCKEKFENVYKYHKRTKESRSGKSEGKTYRFFDQLQALEKQFNVSSYSPKPQPTFATTNNNTVSLPTKPSDTNTPISFNSITTVPSTNPTLISPPPPPLPLPTNSTTNITFTTTTMVTNPSNDNNNNNNNNNNVSYSLPYMNLFSTSSSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKKFLEAIDKREREHMVQQDAWRIQEMARINREHELLVQERTTAAAEDAAVVKFLQKLSGQQNPTTQPFDQTISAKIISPPLVSQVVQPQPQQQHHQLSLMVMNNNVEIQKTSNGHNSGDPLNSPSRWPKAEVHALIRLRTSLDAKYQENAPKAPFWEDISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFEELDALYKEKSKTHNPFGGVTSAFNNVNPNEMMEPLMVQPEQQWRPPSHDENNESQKREREEVADEGDSMEDDNVDDDGEEDRDSMEDEEGRGNHYEIATNTLPSVDIVE* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1824 613 Coils Coil 556 576 - -
Lan4g1824 613 CDD GT1 422 487 - -
Lan4g1824 613 CDD GT1 60 125 - -
Lan4g1824 613 MobiDBLite consensus disorder prediction 544 613 - -
Lan4g1824 613 PANTHER - 6 602 - -
Lan4g1824 613 ProSiteProfiles Myb-like domain profile. 60 118 IPR001005 -
Lan4g1824 613 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 6 602 - -
Lan4g1824 613 SMART sant 58 120 IPR001005 -
Lan4g1824 613 SMART sant 420 482 IPR001005 -
Lan4g1824 613 MobiDBLite consensus disorder prediction 550 567 - -
Lan4g1824 613 MobiDBLite consensus disorder prediction 154 182 - -
Lan4g1824 613 ProSiteProfiles Myb-like domain profile. 416 480 IPR001005 -
Lan4g1824 613 MobiDBLite consensus disorder prediction 1 64 - -
Lan4g1824 613 Gene3D - 62 123 - -
Lan4g1824 613 Gene3D - 424 485 - -
Lan4g1824 613 MobiDBLite consensus disorder prediction 568 590 - -
Lan4g1824 613 Pfam Myb/SANT-like DNA-binding domain 422 509 IPR044822 -
Lan4g1824 613 Pfam Myb/SANT-like DNA-binding domain 60 146 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1824 Lan-Chr4 26797561 26800383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1824 49 547 Trihelix Transcription Factor Family AT1G76880 46.743 5.15e-139 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lan4g1824 Myb_DNA-bind_4 2.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1824 - - gsj:114370603 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0764 8 9805310 9807922 Lan4g1824 4 26797561 26800383 LSH
Lan7g1009 7 10274467 10278041 Lan4g1824 4 26797561 26800383 PCT
Lan8g1206 8 17779334 17783028 Lan4g1824 4 26797561 26800383 PCT
Lan4g1824 4 26797561 26800383 Lan7g1009 7 10274467 10278041 PCT
Lan4g1824 4 26797561 26800383 Lan8g1206 8 17779334 17783028 PCT