Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1819 ATGTCTCACAGGAAGTTCGAACACCCAAGACATGGTTCACTTGGATTTCTCCCTAGAAAGCGTGCTGCTCGTCACAGAGGAAAAGTCAAAGCATTCCCAAAAGATGACCCAACCCAATCACCAAAACTCACTGCTTTCTTGGGTTACAAGGCTGGTATGACCCACATTGTCAGAGAGGTTGACAAACCTGGATCAAAGCTTCACAAGAAGGAAACATGTGAGCCTGTGACCATAATTGAAACTCCTCCAATGGTTGTTGTTGGAGTTGTGGGTTATGTGAAAACTCCACGTGGTCTTCGAACATTGAATACTGTTTGGGCTCAGCATTTGAGTGAGGAGATTAAGCGTAGATTCTATAAGAACTGGTCCAAGTCTAAGAAGAAGGCTTTCACTAAATACTCAAAGCAGTATGAATCTGAAGATGGGAAGAAAAACATTGAGTCACAGCTTCAGAAAATCAAGAAGTATGCTACTGTTGTCCGTGTTCTGGCTCACACTCAGATCAGGAAATTGAAGGGGCTGAAGCAGAAGAAAGCCCATATCATGGAGATTCAGGTAAACGGTGGGACTATTCCACAGAAGGTGGACTTTGCATACAGTTTCTTTGAGAAACAGGTTCCTATTGATGCTGTGTTCCAGAAGGATGAGATGATCGACCTCATAGGTGTGACCAAAGGTAAGGGTTATGAAGGTGTGGTCACCCGTTGGGGCGTTACCCGTCTCCCACGTAAGACTCACAGGGGTTTGAGGAAGGTTGCATGTATTGGTGCCTGGCATCCTGCTAGAGTTTCTTTCACTGTTGCTAGAGCTGGTCAGAATGGATACCATCACAGAACCGAGCTGAACAAGAAGATTTACAGGCTTGGCAAAGCTGGACAAGAGTCTCACGAAGCTGTTACCGATTTTGATAGGACTGAGAAAGACATAACTCCAATGGGTGGGTTCCCACACTATGGTATAGTGAAAGATGATTATCTGATGATTAAGGGAGGGTGTGTTGGTCCTAAGAAAAGGGTTATAACATTGCGCCAATCCTTGCTTAAACAAACTTCTCGTCTTGCACTTGAGGATATCAAGCTCAAGTTTATTGATACATCTTCAAAGTTTGGGCATGGTCGTTTTCAGACAACAGAAGAGAAGCAAAAGTTCTTTGGTCGCCTCAAAGCATAA 1170 0.441 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTQSPKLTAFLGYKAGMTHIVREVDKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWAQHLSEEIKRRFYKNWSKSKKKAFTKYSKQYESEDGKKNIESQLQKIKKYATVVRVLAHTQIRKLKGLKQKKAHIMEIQVNGGTIPQKVDFAYSFFEKQVPIDAVFQKDEMIDLIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYRLGKAGQESHEAVTDFDRTEKDITPMGGFPHYGIVKDDYLMIKGGCVGPKKRVITLRQSLLKQTSRLALEDIKLKFIDTSSKFGHGRFQTTEEKQKFFGRLKA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1819 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Lan4g1819 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Lan4g1819 389 Gene3D Translation factors 44 385 - -
Lan4g1819 389 MobiDBLite consensus disorder prediction 1 20 - -
Lan4g1819 389 Gene3D - 83 207 - -
Lan4g1819 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Lan4g1819 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Lan4g1819 389 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 1 389 - -
Lan4g1819 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1819 Lan-Chr4 26752439 26760473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1819 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.305 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1819 K02925 - gmx:100819132 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0757 8 9758398 9761383 Lan4g1819 4 26752439 26760473 LSH
Lan20g0088 20 518088 520846 Lan4g1819 4 26752439 26760473 LSH