Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1818 ATGGCTGAACCTTCCAAGGTCATTCATGTTCGAAATGTGGGGCAGGAGATAACTGAAAATGATTTACTTCAGCTGTTTCAGTCTTTTGGAGTCATAACAAAGCTAGTGATGCTGCGAGCAAAGAATCAGGCTCTTATCCAAATGCAAGATGTTGCTACAGCAGTTAGTGCTTTACAATTTTATGAAAATGTTCAGCCAAACATAAGGGGAAGGAATGTTTATGTCCAGTTTTCCTCACATCAGGAACTGGCACCAATGGATCAAAATCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACGTGCTTTATCCTATGACAGTGGATGTGCTCCATCGAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTGTCAGGCTCTCATTCAGTATCAATCACGTCAGAGTGCTGTTACAGCGAAAAATGCACTTCAGGGACGCAATGTTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGGGACTTCACAAACCCGAATCTCCCTACTGAGCAGAAAGGCAGACCTTCACAACCTGATGCAGGAAATATGTATGGGTCAGGCGCAAGGGGAGGTGGACTTTCGCATATGGCGAATGCTGATGCCATTGCAGCTGCCTTTGGGGGAAATTTGCCTCCTGGAATAACGGGGGGAAATGACAGGTGTACTATTCTTGTCTCAAATCTGAATCCCGATAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTGAGAATTAAACTTCTCCGGAACAAACCAGATCATGCACTTGTCCAGATGGGAGATGGTTTCCAATCTGAATTAGCAGTACACTTTCTGAAGGGAGCATTGCTGTTTGGGAAGCCGATAGAGTTGAACTTCTCAAAACATGCAACGATACTCCAAGGTGCTGACACACGCGAGTATGGCAATTCGAACCTGAATCGATTCAATCGTAATGCTGCAAAGAATTATCGATACTGCTGCTCTCCGACGTGGATGATCCATTTGTCCACTCTCCCGCAAGACATCACTGAAGAAGATATTGTGAGCCTGGTAGAGGACCACGGAGTCATTCTGAATTGCAAGGTCTTCGAAATGAATGGGAAAAAGCAAGCTCTTGTTCAGTTCGAGAACGAGGAGCAAGCTACTGAAGCTCTTGTGTGCAAGCACGCAACATCACTTTCGGGCTCAGTAGTCCGTATCTCCTTCTCTCAACTGCAGAACATATGA 1314 0.4414 MAEPSKVIHVRNVGQEITENDLLQLFQSFGVITKLVMLRAKNQALIQMQDVATAVSALQFYENVQPNIRGRNVYVQFSSHQELAPMDQNQGRGDEPNRILLVTIHHVLYPMTVDVLHRVFSPHGSVEKIVTFQKSAGCQALIQYQSRQSAVTAKNALQGRNVYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPDAGNMYGSGARGGGLSHMANADAIAAAFGGNLPPGITGGNDRCTILVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQSELAVHFLKGALLFGKPIELNFSKHATILQGADTREYGNSNLNRFNRNAAKNYRYCCSPTWMIHLSTLPQDITEEDIVSLVEDHGVILNCKVFEMNGKKQALVQFENEEQATEALVCKHATSLSGSVVRISFSQLQNI* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1818 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 365 427 IPR000504 GO:0003723
Lan4g1818 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Lan4g1818 437 Gene3D - 342 436 IPR012677 -
Lan4g1818 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Lan4g1818 437 Pfam RRM-like domain 95 174 IPR021790 -
Lan4g1818 437 CDD RRM4_PTBPH3 353 431 - -
Lan4g1818 437 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Lan4g1818 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 329 - -
Lan4g1818 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 360 434 IPR000504 GO:0003723
Lan4g1818 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 324 IPR000504 GO:0003723
Lan4g1818 437 SUPERFAMILY RNA-binding domain, RBD 248 431 IPR035979 GO:0003676
Lan4g1818 437 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 436 - -
Lan4g1818 437 MobiDBLite consensus disorder prediction 185 205 - -
Lan4g1818 437 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 436 - -
Lan4g1818 437 MobiDBLite consensus disorder prediction 185 217 - -
Lan4g1818 437 Gene3D - 98 201 IPR012677 -
Lan4g1818 437 Gene3D - 247 341 IPR012677 -
Lan4g1818 437 SMART rrm1_1 7 76 IPR000504 GO:0003723
Lan4g1818 437 SMART rrm1_1 251 320 IPR000504 GO:0003723
Lan4g1818 437 SMART rrm1_1 101 170 IPR000504 GO:0003723
Lan4g1818 437 SMART rrm1_1 361 430 IPR000504 GO:0003723
Lan4g1818 437 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Lan4g1818 437 Gene3D - 1 97 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1818 Lan-Chr4 26751211 26757507 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1818 K14948 - gmx:100819672 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0756 8 9751040 9757507 Lan4g1818 4 26751211 26757507 LSH
Lan20g0089 20 523950 528682 Lan4g1818 4 26751211 26757507 LSH