Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1809 ATGACAGAAGTGGAGACAGCGTCGCCGACGGCGGCGTCGGTGCCGGCAACTCCGGAAACGCCGGGAGGGCCACTATTTACGTCGCTGCGAGTTGACTCACTACCACACGAGCATAACTCGTTCTCAATGGCAAGGTGCAAATGTTTTCCAAATCAGGGACAAACTTGCTTCACTGATTTCTCAGTTGGTGTTCCAATTCCCAATATCTCTCTCACTCGAAAGATTGGAGCAGAGTTTGTGGGAACATTCATATTGATATTTGCAGCAACAGCAGGACCCATAGTGAACAACAAGTACAATGGAGCAGAGGGTCTAATGGGAAATGCAGCTACTGCAGGACTAACAGTAATGTTCATCATTCTCTCAATTGGACACATTTCTGGTGCACATCTCAACCCATCACTCACCATTGCATTCGCGACATTCCGCCATTTCCCTTGGACACATGTTCCTGCATACATTGCAGCACAAGTTTCTGCCTCCATCTGTGCTTGTTTTACCCTCAAAGGTGTCTATCATCCTTACCTCACTGGTGGAGTCACTGTCCCTTCTGTCACTGTTGGCCAAGCTTTTGCAACCGAGTTTATTATCACTTTTATTCTCATGTTTGTGGTCACTGCTGTTGCTACTGATACTCGTGCGGTTGGTGAATTGGCAGGTATTGCTGTTGGAGCCACAGTTTTGCTCAACATTCTCATATCAGGGCCAACAAGTGGCGGTTCCATGAATCCGGTGCGCACCTTGGGTCCAGCCGTTGCAGCAGGAAATTACAAACATATCTGGCTCTATTTGGTGGCGCCAACACTCGGCGCTCTTGCTGGCGCAGGTGTTTATACGCTCGTCAAGCTCCATGACTCCAAGGACGACCCACCGCGTCAGGTTAGAAGCTTCCGTCGCTAG 900 0.4933 MTEVETASPTAASVPATPETPGGPLFTSLRVDSLPHEHNSFSMARCKCFPNQGQTCFTDFSVGVPIPNISLTRKIGAEFVGTFILIFAATAGPIVNNKYNGAEGLMGNAATAGLTVMFIILSIGHISGAHLNPSLTIAFATFRHFPWTHVPAYIAAQVSASICACFTLKGVYHPYLTGGVTVPSVTVGQAFATEFIITFILMFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWLYLVAPTLGALAGAGVYTLVKLHDSKDDPPRQVRSFRR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1809 299 ProSitePatterns MIP family signature. 130 138 IPR022357 -
Lan4g1809 299 CDD MIP 73 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g1809 299 Pfam Major intrinsic protein 69 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g1809 299 PANTHER AQUAPORIN NIP2-1 10 297 IPR034294 -
Lan4g1809 299 PANTHER AQUAPORIN NIP5-1-RELATED 10 297 - -
Lan4g1809 299 MobiDBLite consensus disorder prediction 1 15 - -
Lan4g1809 299 SUPERFAMILY Aquaporin-like 70 287 IPR023271 -
Lan4g1809 299 MobiDBLite consensus disorder prediction 1 28 - -
Lan4g1809 299 Gene3D Glycerol uptake facilitator protein. 67 293 IPR023271 -
Lan4g1809 299 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g1809 299 PRINTS Major intrinsic protein family signature 112 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g1809 299 PRINTS Major intrinsic protein family signature 149 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g1809 299 PRINTS Major intrinsic protein family signature 193 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g1809 299 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g1809 299 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1809 Lan-Chr4 26690903 26694355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1809 25 299 Major Intrinsic Protein MIP AT4G10380 74.377 1.20e-149 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1809 K09874 - gmx:100775229 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0753 8 9722840 9725134 Lan4g1809 4 26690903 26694355 LSH