Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1798 ATGGATAGAAAGTTCTGGGCTTTAGTTTTCATCTTCTCTGTCTTATTTGTTCATCCACTATGCCTCATTTCTGCTAACATGGAAGGTGATGCTTTACATAGCCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAACCCGTGCACATGGTTTCATGTAACATGTAACAATGATAATAGTGTCATAAGAGTTGATCTGGGAAATGCTGCTTTGTCTGGTCAACTTGTTCCACAGCTTGGTCAGCTCAAGAATTTGCAGTATCTGGAACTTTACAGCAATAACATTACTGGCCCTATTCCAAGTGATCTTGGGAATCTTACGAACTTAGTGAGCTTGGATCTGTACCTGAACACCTTCACTGGCCCTATCCCAGATTCGCTGGGCAAGTTGTCAAAATTGCGTTTCTTCCGGCTTAATAACAACAGCTTGTCTGGTCCGATACCCATGTCACTGACTAATATTTCGTCTCTCCAAGTTCTTTTTGCCAACAACTTGGCTCTATGTGGACCAGTCACTGGCCACCCTTGTCCCGGCTCTCCTCCATTTTCTCCTCCTCCGCCATTTGTCCCTCTACCCCCAATTTCTGCCCCAGGAGGTAATAGTGCCACTGGGGCAATAGCTGGAGGAGTTGCTGCAGGCGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCGTGGTGGCGTCGGAGGAAACCTCAGGAATTTTTCTTTGATGTTCCTGCTGAAGAGGATCCTGAGGTCCATCTTGGGCAGCTTAAGAGATTCTCACTACGAGAACTGCAAGTTGCAACAGATACTTTCAGCAATAAGAACATTCTTGGGAGGGGAGGATTTGGTAAGGTATACAAAGGACGCTTGGCAGATGGTTCATTAGTCGCTGTCAAAAGATTGAAAGAGGAGCGAACTCCTGGTGGGGAGCTTCAGTTTCAGACCGAGGTAGAGATGATCAGCATGGCTGTGCATAGAAATCTCCTCCGTTTACGTGGGTTTTGTATGACACCAACAGAAAGGCTACTTGTTTACCCTTACATGGCTAATGGAAGTGTTGCCTCATGCTTAAGAGAGCGTCCTCCACATCAAGAACCCCTAGATTGGCCAACAAGGAAAAGAATAGCTTTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCTAAGATTATTCATCGCGATGTAAAGGCTGCAAACATATTGTTGGATGAGGAGTTCGAGGCTGTTGTCGGAGATTTTGGATTAGCAAAACTCATGGATTACAAGGATACCCATGTGACAACTGCTGTACGCGGCACAATTGGACACATAGCTCCGGAATACCTATCTACTGGTAAATCTTCAGAGAAAACCGACGTTTTTGGTTATGGTATTATGCTTCTCGAGCTGATCACTGGACAAAGGGCTTTTGACCTTGCTCGGCTTGCCAACGATGATGATGTTATGCTGCTTGATTGGGTAAAAGGACTGCTGAAAGAGAAAAAGCTAGAAATGTTGGTGGATCCTGATCTACATAACAATTACATAGAAGCAGAGGTAGAACAGTTAATCCAGGTTGCACTACTCTGCACACAAGGTTCCCCGATGGATCGACCGAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGCGATGGGCTGGCAGAAAGATGGGATGAGTGGCAAAAAGTCGAAATTCTGAGGCAGGAAGTGGAGCTTGCCCCTCATCACAATTCTGATTGGATTCTTGACTCAACTGAAAATTTACATGCAGTTGAGTTATCTGGTCCTAGGTGA 1803 0.4504 MDRKFWALVFIFSVLFVHPLCLISANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNTFTGPIPDSLGKLSKLRFFRLNNNSLSGPIPMSLTNISSLQVLFANNLALCGPVTGHPCPGSPPFSPPPPFVPLPPISAPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEVELAPHHNSDWILDSTENLHAVELSGPR* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1798 600 Pfam Protein kinase domain 278 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1798 600 ProSitePatterns Protein kinases ATP-binding region signature. 283 305 IPR017441 GO:0005524
Lan4g1798 600 SUPERFAMILY Protein kinase-like (PK-like) 256 552 IPR011009 -
Lan4g1798 600 SUPERFAMILY L domain-like 28 179 - -
Lan4g1798 600 Gene3D Ribonuclease Inhibitor 24 186 IPR032675 -
Lan4g1798 600 ProSiteProfiles Protein kinase domain profile. 277 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1798 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Lan4g1798 600 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 10 169 IPR031048 GO:0004675|GO:0005102|GO:0006468
Lan4g1798 600 Gene3D Phosphorylase Kinase; domain 1 246 353 - -
Lan4g1798 600 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 169 - -
Lan4g1798 600 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 168 600 IPR031048 GO:0004675|GO:0005102|GO:0006468
Lan4g1798 600 Gene3D Transferase(Phosphotransferase) domain 1 354 571 - -
Lan4g1798 600 SMART serkin_6 277 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1798 600 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Lan4g1798 600 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 168 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1798 Lan-Chr4 26617056 26622358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1798 8 600 Receptor kinase-like Gene Family AT1G71830 85.645 0.0 986
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lan4g1798 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1798 K13418 - gmx:100789884 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0109 20 656057 666281 Lan4g1798 4 26617056 26622358 LSH