Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1796 ATGGCCTCCTCCTCCTCCGGCAACCCCTCCGAGTCGGAGTTCAATTTCTCACCCGATTTTCCACCGAGAATCTCTCTCACTCTCGATCAACTCAACTACTGCACCCAAGCTCTCACCTTCTTCAACGACAAGATCCGTAACCCTAACTCAATCCTTCAAGACTTCGATCACTTGCAGGCCAATCGGATAACGCCAACTCAAATGAGAAGAAGATGCAATGTTGCTTTTGATGCCGTTAATCTCAACAAAAATCGTTATACTGATGTAGTTCCATTTGACAACAATAGGGTTGTTCTCAAATCAAGCACAGATTATAGACCTGCAGCACTTGGCTATATCAATGCAAGCTTCATTGAGACCTCTGGAAATGTATCTAAGTTTATAGCAACCCAAGGTCCACTGCCACACACTTACGAGGATTTCTGGGAGATGCTTATCCAATATCGCTGCCCTGCCATTGTCATGCTTACTAGGTTGGTTGACCATTACAAGATGGTAAAGTGTGGAGATTATTTTCAAGCTGAGGATGGACCTCGAGAATTTGGTAATATCTCTATTGTCAGCAAATGGACGAATGTTACTGAATCTGCACTTGTGCTGCGCCATTTGGAGGTCGCTCGTCAAGATCTAGAAGACACACCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCAAATGATACGTCATCTGTGCGTGAGATTTTGAAAAGATTATATCATTTGCCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACAATTCACAATACAATTCAGAGAATACTAGCTGGTGATATGTCTGCATTAGATATTGCTAATACAGTCGCTGGGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACTCAGGATCAGTACATTTTCTGCTATAAAGCTATCATAGATGAGCTGGAAGACCTTGTATCTCAGCAGTAA 984 0.4339 MASSSSGNPSESEFNFSPDFPPRISLTLDQLNYCTQALTFFNDKIRNPNSILQDFDHLQANRITPTQMRRRCNVAFDAVNLNKNRYTDVVPFDNNRVVLKSSTDYRPAALGYINASFIETSGNVSKFIATQGPLPHTYEDFWEMLIQYRCPAIVMLTRLVDHYKMVKCGDYFQAEDGPREFGNISIVSKWTNVTESALVLRHLEVARQDLEDTPLSVLHIQYPEWPDHGVPNDTSSVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSALDIANTVAGFRSQRIGMVQTQDQYIFCYKAIIDELEDLVSQQ* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1796 327 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 12 326 - -
Lan4g1796 327 SMART PTPc_3 50 321 IPR000242 GO:0004725|GO:0006470
Lan4g1796 327 Pfam Protein-tyrosine phosphatase 80 317 IPR000242 GO:0004725|GO:0006470
Lan4g1796 327 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 12 326 - -
Lan4g1796 327 Gene3D Protein tyrosine phosphatase superfamily 26 326 IPR029021 -
Lan4g1796 327 CDD PTPc_plant_PTP1 112 313 - -
Lan4g1796 327 SMART ptp_7 216 318 IPR003595 -
Lan4g1796 327 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 238 310 IPR000387 GO:0016311|GO:0016791
Lan4g1796 327 ProSitePatterns Tyrosine specific protein phosphatases active site. 256 266 IPR016130 GO:0016311|GO:0016791
Lan4g1796 327 ProSiteProfiles PTP type protein phosphatase domain profile. 51 319 IPR000242 GO:0004725|GO:0006470
Lan4g1796 327 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 36 321 IPR029021 -
Lan4g1796 327 PRINTS Protein tyrosine phosphatase signature 111 118 IPR000242 GO:0004725|GO:0006470
Lan4g1796 327 PRINTS Protein tyrosine phosphatase signature 127 147 IPR000242 GO:0004725|GO:0006470
Lan4g1796 327 PRINTS Protein tyrosine phosphatase signature 215 232 IPR000242 GO:0004725|GO:0006470
Lan4g1796 327 PRINTS Protein tyrosine phosphatase signature 253 271 IPR000242 GO:0004725|GO:0006470
Lan4g1796 327 PRINTS Protein tyrosine phosphatase signature 286 301 IPR000242 GO:0004725|GO:0006470
Lan4g1796 327 PRINTS Protein tyrosine phosphatase signature 302 312 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1796 Lan-Chr4 26598036 26601282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1796 29 325 Protein tyrosine phosphatase (PTP) family AT1G71860 68.227 1.07e-155 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1796 - - gmx:548044 529.635