Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1795 ATGGCTGAGTCTTGTCCTAGAATGTCTCTCAGTCATGTTCAAGTGAAGAACTGCACAGAAGCATTGACTTACTTGAAGGACAAGCTTATAAACAACCTTCACTTGATTCTTCAAGACTTTGCTCATTTAGAGGCCAATATGATAACACCAACTGAGATGAGGAGAAGATCCACTATAGCTCTTCAACCTCTCAACTTCAACAAAAATAGATATACTTCTATCTTACCATTTGATGAGAACAGGGTTATTCTCAGATCTAGTACAGATGGTAGATCTGAAGCACATGACTATATCAATGCAAACTATTGCTCTATAGAGGGCTCTTGTCCTGGAAGTGTATCCCATTTTATTGCAACACAAGGACCATTGCCACAAACCTATGAGGATTTCTGGGACATGCTTATCCAACAACATTGCCCTGTCATTGTCATGCTTACTAGCTTGGTCGAAAATGACACTGTAAAGTGTGGTGATTATTTCCAAACTGAGGATGATGAACCTACAATATTTGGTAATATCTCCATTCTCACTAAATGGGTCAAATCTACTGAAAATGCACTTCTGTTGCGTCATTTGGAGGTTAAACATAAAGATCTAGAAGAGGCATCATTTGTTTTGCATGTTCACTATAATGAATGGCCTGATGAGGGAGTTCCCAAAGATACATTTGCTGTGCGTGAAATTCTGAAAAGATTGTACCATTTACCACCAAACCTTGGCCCAATTGTTGTACACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACTATTCACAATACAATTCAGAGAATACTTGCTGGTGATTTGTCTGCTTTAGATATTGCTAATACAGTATCTGTGTTCAGGTCTCAGCGTATTGGAATGCTTCAGACTCAGGACCAGTACATTTTCTGCTATAAAGCTATCATAGATGAGTTGGAAGACCTTGTATCTCAATAG 945 0.3894 MAESCPRMSLSHVQVKNCTEALTYLKDKLINNLHLILQDFAHLEANMITPTEMRRRSTIALQPLNFNKNRYTSILPFDENRVILRSSTDGRSEAHDYINANYCSIEGSCPGSVSHFIATQGPLPQTYEDFWDMLIQQHCPVIVMLTSLVENDTVKCGDYFQTEDDEPTIFGNISILTKWVKSTENALLLRHLEVKHKDLEEASFVLHVHYNEWPDEGVPKDTFAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDLSALDIANTVSVFRSQRIGMLQTQDQYIFCYKAIIDELEDLVSQ* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1795 314 Gene3D Protein tyrosine phosphatase superfamily 32 314 IPR029021 -
Lan4g1795 314 ProSiteProfiles PTP type protein phosphatase domain profile. 36 307 IPR000242 GO:0004725|GO:0006470
Lan4g1795 314 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 30 309 IPR029021 -
Lan4g1795 314 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 7 313 - -
Lan4g1795 314 CDD PTPc_plant_PTP1 97 301 - -
Lan4g1795 314 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 7 313 - -
Lan4g1795 314 PRINTS Protein tyrosine phosphatase signature 96 103 IPR000242 GO:0004725|GO:0006470
Lan4g1795 314 PRINTS Protein tyrosine phosphatase signature 116 136 IPR000242 GO:0004725|GO:0006470
Lan4g1795 314 PRINTS Protein tyrosine phosphatase signature 203 220 IPR000242 GO:0004725|GO:0006470
Lan4g1795 314 PRINTS Protein tyrosine phosphatase signature 241 259 IPR000242 GO:0004725|GO:0006470
Lan4g1795 314 PRINTS Protein tyrosine phosphatase signature 274 289 IPR000242 GO:0004725|GO:0006470
Lan4g1795 314 PRINTS Protein tyrosine phosphatase signature 290 300 IPR000242 GO:0004725|GO:0006470
Lan4g1795 314 ProSitePatterns Tyrosine specific protein phosphatases active site. 244 254 IPR016130 GO:0016311|GO:0016791
Lan4g1795 314 SMART PTPc_3 35 309 IPR000242 GO:0004725|GO:0006470
Lan4g1795 314 SMART ptp_7 204 306 IPR003595 -
Lan4g1795 314 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 226 298 IPR000387 GO:0016311|GO:0016791
Lan4g1795 314 Pfam Protein-tyrosine phosphatase 65 305 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1795 Lan-Chr4 26593907 26597089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1795 14 313 Protein tyrosine phosphatase (PTP) family AT1G71860 60.596 2.42e-132 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1795 - - gmx:548044 425.631