Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1790 ATGGGTACCTCCAATTTTCTCTTGTTTTTCTTCTATTTGGTGGGTTTGTGTGCTATGGTGGCTGCCAAGGTGGTTTTGATTGGGAATAATGTTACCCTCTCCTTTGATGATATTGAAGCTAATTTCGCTCCTGCGGCCAAAGGGTCTGGAGAACGTGGTACCTTATATTTGGCAGAGCCGCTCGATGCATGTACAGAATTGACAAATAAAGCCGGAAATCTTTCAAATGTGAGTTCACCTTTTGTTTTGGTGGTTCGAGGGGGATGCAGCTTTGAGGAGAAGGTCAGAAGTGCACAAAGGGCTGGATACAAAGCTGCAATTATTTATGACAATGAGGATGGTGGTGTCTTGGTTGCAATGGCCGGAAACTCTGCTGGTATAAGAATACAGGCTGTATTTGTATCAAAAACTTCAGGTGAAATGCTAAAGAAATATGCCGGATCAACTAATGTGGAACTATGGCTAATTGCAAGTTTTGAAAACTCAGCTTGGTCTATCATGGCAATTTCATTTATCTCCTTACTAGCTATGTCGGCAGTGCTGGCCACTTGTTTCTTTGTCAAGAGGCATCGTATAAGAAGAGAAAGGCCTCAAGGTTCTTGTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGGTATTTACTGCTGTTTTAGAAGATAGCTACTGTACATCAAGAACATGTGCTATATGCCTTGAAGACTATTGTGTTGGAGAGAAGCTCAGAGTTCTTCCCTGCTGTCACAAGTTTCATACTGTCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGACGCAAGAACTGGTTTAACTGATCCACCACCTTCAGAATCCACACCTTTGCTTTCATCAAGCCTTGCATCTGTGGGATCCTCTGTCTTATCTTCTGGCAGATCATCGTTAGCATCTTCCTCAGCTATACAAATTGCTCGGACACCATCTCAGTCCTCGTATGTTTCTCGTAACCACTCTTTAGCTAGTACACCCTATGTGCAGCCATCTTTTAGTTCCTACCGTCAGTCCCCCTCCTTTAGCATCGGCCGAAGCTCAGTAGATCTTAGGAATGGATCGCAAAGGTCTGTAGCGTCTCACTTGATTTCACCACGCTCAATGGGTTACCCATCCTTGTCATCTCTTAACTCAAGGTACATGTGTCCATACATTCCAAGTCCAAGCAATGCTTCAGCAAGTTACATGGGTTCGTCTAGTCACCAACAGCATCCACTCCGTTATAGCGAGTCAGCCACGAGCTTCTCACCATTTGCTTCCGCAAACTCCCTTCCAGAAGTTTAA 1335 0.4404 MGTSNFLLFFFYLVGLCAMVAAKVVLIGNNVTLSFDDIEANFAPAAKGSGERGTLYLAEPLDACTELTNKAGNLSNVSSPFVLVVRGGCSFEEKVRSAQRAGYKAAIIYDNEDGGVLVAMAGNSAGIRIQAVFVSKTSGEMLKKYAGSTNVELWLIASFENSAWSIMAISFISLLAMSAVLATCFFVKRHRIRRERPQGSCVREFHGMSSRLVKAMPSLVFTAVLEDSYCTSRTCAICLEDYCVGEKLRVLPCCHKFHTVCVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSLASVGSSVLSSGRSSLASSSAIQIARTPSQSSYVSRNHSLASTPYVQPSFSSYRQSPSFSIGRSSVDLRNGSQRSVASHLISPRSMGYPSLSSLNSRYMCPYIPSPSNASASYMGSSSHQQHPLRYSESATSFSPFASANSLPEV* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1790 444 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 371 - -
Lan4g1790 444 SUPERFAMILY PA domain 76 152 IPR046450 -
Lan4g1790 444 Pfam Ring finger domain 234 277 IPR001841 -
Lan4g1790 444 SUPERFAMILY RING/U-box 218 287 - -
Lan4g1790 444 SMART ring_2 235 276 IPR001841 -
Lan4g1790 444 Pfam PA domain 61 142 IPR003137 -
Lan4g1790 444 Gene3D - 22 157 - -
Lan4g1790 444 CDD PA_C_RZF_like 21 163 IPR044744 -
Lan4g1790 444 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Lan4g1790 444 CDD mRING-H2-C3H2C2D_ZSWM2 234 277 - -
Lan4g1790 444 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 371 - -
Lan4g1790 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 282 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1790 Lan-Chr4 26546028 26551097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1790 21 443 C3H Transcription Factor Family AT1G22670 48.009 1.46e-115 343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0741 8 9634192 9639716 Lan4g1790 4 26546028 26551097 LSH
Lan20g0114 20 683629 688228 Lan4g1790 4 26546028 26551097 LSH