Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1782 ATGACATTAACCCAAATTTCTGAGAGACCATTAATGAATATGGAATCATGTGTGCCTCCAGGATTTAGATTTCACCCAACAGAAGAAGAACTTGTGGGATATTACCTTAAGAGGAAGATAAACTCTCTAAAAATCGACCTAGATGTTATTGTTGAGATCGATCTCTATAAAATTGAACCATGGGATATACAAGATAGATGCAAGCTAGGATATGAGGAACAAAATGAGTGGTACTTTTTCAGCCACAAAGATAAGAAATATCCAACAGGTACAAGAACTAATAGAGCTACTGTTGCTGGATTCTGGAAAGCAACAGGAAGAGACAAAGCTGTGATGTGCAAAAACAGAATAATAGGAATGAGGAAAACCCTTGTCTTCTATAAGGGACGTGCCCCAAATGGAAGAAAAACTGATTGGATAATGCATGAGTATAGACACCTAACCTCAGAACATGGTCCTCCACAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTAGAAAGCCTACTCCAAGTCACAGACCAGGTTTTGAACCATGGTGTAGTAGTAGCCAACAACAACAACAACAACACTATTTCAGGGATCAAAGCTATGCAAGGCCCTTAACAATTGCAGATATTTTAAATGAAACTCATGTGCTTCATCCTGCTGAAGACACAAGTAGTTTTAGTAGTATTATCCCCTTTAACTTAGAGCAGCAAGAGTTTCTACCAAACCAAACTTTTATGGATCAAAAACAACTCATTGAGCTTCCACAACTAGATAGTCCCACTGTTTCTCTATCAGCAATAGAAGAATGCAACCAATTACAACACCATAATGGTATAACAAATGAAGAATATAGCAGTGATATTGAAAGGTGTAATAATAACAATGAACAAGATGGTGCTGTTGATTGGAAAAGCTTGGATAATTTGTTTGCTTCAGATTCTTCAGCTTACTTTACACATCAAAACTTGCCCTTCATGATGCCACATAGCCATGAACTACAACCTCGAAATCAAGCTAGTCACATCCTAGGATGTTTTCCTGATTCATAG 1038 0.3796 MTLTQISERPLMNMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKIEPWDIQDRCKLGYEEQNEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKAVMCKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHLTSEHGPPQEEGWVVCRAFRKPTPSHRPGFEPWCSSSQQQQQQHYFRDQSYARPLTIADILNETHVLHPAEDTSSFSSIIPFNLEQQEFLPNQTFMDQKQLIELPQLDSPTVSLSAIEECNQLQHHNGITNEEYSSDIERCNNNNEQDGAVDWKSLDNLFASDSSAYFTHQNLPFMMPHSHELQPRNQASHILGCFPDS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1782 345 SUPERFAMILY NAC domain 11 167 IPR036093 GO:0003677|GO:0006355
Lan4g1782 345 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Lan4g1782 345 ProSiteProfiles NAC domain profile. 18 167 IPR003441 GO:0003677|GO:0006355
Lan4g1782 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 16 320 - -
Lan4g1782 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 16 320 - -
Lan4g1782 345 Gene3D NAC domain 27 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1782 Lan-Chr4 26512588 26516292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1782 14 345 NAC Transcription Factor Family AT1G71930 53.161 1.73e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan4g1782 NAM 2.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1782 - - var:108325420 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0734 8 9585848 9589633 Lan4g1782 4 26512588 26516292 LSH
Lan20g0120 20 718824 721589 Lan4g1782 4 26512588 26516292 LSH