Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1748 ATGGCAACAGAAGAGTCTACTCTTGCGGTTGAAGTCACCGCGCCGGAGCCAATCACCACCGAACCACCACCACCACCACCGGCTGAAGAATCCAAGCCTGTAACCAAGGCTAAGAAAACCAAAGATCCCAAACCTAAGAAAGTTTCCAAACCACGCATTTCTACTCATCCTCCTTACGAAGAGATGATTAAGGAAGCGATTGTGTCGTTGAAAGAGAGAACAGGTTCAAGCCAGTACGCGATTACGAAGTTTGTTGAAGAGAAACATAATCTTCTTCCTCCAAACTTCAGGAAGCTCTTGCTCTTCAATTTGAAGAAGCTTGTTGCTTCTGGAAAGCTTGTTAAGGTTAAAGGATCCTTCAAGATTCCTTCAACTCCTAAAAGCAAGCCCGAGCCTGCTAAGCCCGAGCCTGCTAAGCCCAAACCCAAATCTGTAGCTAAACCTGCACCCAAGGCACCGGCTAAGGCTAAGCTTGCTACTAAGCCCAAGCCCAAAGCTGCTGTGGCAAAATCGAAAGCTGTTGCTGCTAAGCCCAAGGCTGCTGTGGTAAAGCCCAAGGGAGCTGTTGCGAAGCCCAAGGCTGTAGCGAAGACTAAGGTTGTTGCTGCAAAGACCAAGGTTGCGGTGAAGCCCAAGGCGAAGGCCACGAGGACATCGACGAGGACTTCTCCAGGGAAGAAGGTTGCGGCAGTTAAACCGGCGGTGAAGAAGGCAGCGACGTTGAAGAAGGCTGCGGTGAAGAGTGTTAAACCAAAGAGTGTAAAGTCGCCGGCGAAGAGGGTTGGGGCTAAGAGGAATGGAAGGAAGTGA 810 0.5025 MATEESTLAVEVTAPEPITTEPPPPPPAEESKPVTKAKKTKDPKPKKVSKPRISTHPPYEEMIKEAIVSLKERTGSSQYAITKFVEEKHNLLPPNFRKLLLFNLKKLVASGKLVKVKGSFKIPSTPKSKPEPAKPEPAKPKPKSVAKPAPKAPAKAKLATKPKPKAAVAKSKAVAAKPKAAVVKPKGAVAKPKAVAKTKVVAAKTKVAVKPKAKATRTSTRTSPGKKVAAVKPAVKKAATLKKAAVKSVKPKSVKSPAKRVGAKRNGRK* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1748 269 MobiDBLite consensus disorder prediction 253 269 - -
Lan4g1748 269 MobiDBLite consensus disorder prediction 118 194 - -
Lan4g1748 269 MobiDBLite consensus disorder prediction 17 31 - -
Lan4g1748 269 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan4g1748 269 SUPERFAMILY "Winged helix" DNA-binding domain 54 135 IPR036390 -
Lan4g1748 269 PANTHER HISTONE H1.1 2 269 - -
Lan4g1748 269 CDD H15 54 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan4g1748 269 MobiDBLite consensus disorder prediction 1 60 - -
Lan4g1748 269 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan4g1748 269 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan4g1748 269 Gene3D - 52 135 IPR036388 -
Lan4g1748 269 MobiDBLite consensus disorder prediction 210 269 - -
Lan4g1748 269 PANTHER HISTONE H1 2 269 - -
Lan4g1748 269 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan4g1748 269 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan4g1748 269 PRINTS Histone H5 signature 111 135 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan4g1748 269 PRINTS Histone H5 signature 145 159 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan4g1748 269 PRINTS Histone H5 signature 201 220 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1748 Lan-Chr4 26135510 26136603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1748 25 174 Single Myb Histone (SMH) Gene Family AT1G49950 28.931 1.98e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1748 K11275 - gmx:100795994 119.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0509 9 7919732 7920969 Lan4g1748 4 26135510 26136603 LSH