Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1747 ATGGAGGAGATTGAATTAGCTAACAGAGCAGCTGTTGAAAGCTGTCATAGAGTTCTTAATATGTTGTCTCAGCCCAAGGATCAAAATCAGCCAAGGAATTTAATGGTGGAAACTGGTGAAGCAGTGGGAAGGTTCAAAAAAGTTGTGTCCTTGTTACATAATGGTTTGGGTCATGCTAGAGTCAGGAAGCTTAAAAAACTTCAACTCCCCTTTTCCGAAAATATCCTCTTGGACAACCCAAATTGCCAAAGCAAAACCACCAACCAGTCTAAAAATCTTTACTTTCCCCAAACCCAAACCGGCTTTCCTGATAATTCAATTCAGGAATTCGGCTCAAGTGTCAGGAACACACTCTCTCTTGGAAACCCTTCGTTGGAATTGAACTCGAGTGGGAAAACTCCTCTGCAGCTTGTACAACAAGCTTCGTCTGCGCACTATCAGTTCCTTCAGCAGCAGCAGCAACAACAAAGGTTGATAGCGCAGCAGCAACAAATGAAACATCAAGCGGAAATGATGTACCGGAGGAACAATAGCAGCAGCATAAACCTGAACTTTGACAGTACTAGCTGCACGCCCACAATGTCGTCTACCAGGTCTTTCATTTCTTCCTTGAGCATAGACGGAAGCGTAGCGAACGTGGATGGAAGCGCCTTTCATTTAATTGGAGCTCCGCCGCAGTCTTCAGATCAGAATTCACAACAGCATAAGAGAAAATGTTCTGCCAGAGGCGACGAGGGCAGCATGAAATGTGGTAGCAGTTCTAGGTGCCATTGCTCAAAGAAGAGGAAGCATAGAGTCAAGAGATCAATCAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATCCCTCCCGATGACTATTCCTGGCGGAAGTATGGGCAGAAGCCTATCAAGGGCTCTCCTCACCCTAGGGGATATTATAAGTGCAGCAGCATGAGAGGCTGCCCTGCTAGGAAGCATGTTGAAAGGTGTTTGGAAGAGCCTACAATGCTGATTGTTACCTATGAAGGCGAGCATAACCACCCTAAACTACTAGCACAATCTGCAAATGCATGA 1056 0.4555 MEEIELANRAAVESCHRVLNMLSQPKDQNQPRNLMVETGEAVGRFKKVVSLLHNGLGHARVRKLKKLQLPFSENILLDNPNCQSKTTNQSKNLYFPQTQTGFPDNSIQEFGSSVRNTLSLGNPSLELNSSGKTPLQLVQQASSAHYQFLQQQQQQQRLIAQQQQMKHQAEMMYRRNNSSSINLNFDSTSCTPTMSSTRSFISSLSIDGSVANVDGSAFHLIGAPPQSSDQNSQQHKRKCSARGDEGSMKCGSSSRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLLAQSANA* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1747 351 SMART WRKY_cls 283 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g1747 351 Gene3D WRKY domain 268 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan4g1747 351 ProSiteProfiles WRKY domain profile. 278 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g1747 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 350 IPR044810 GO:0003700
Lan4g1747 351 Pfam WRKY DNA -binding domain 285 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g1747 351 Pfam Plant zinc cluster domain 236 281 IPR018872 -
Lan4g1747 351 SUPERFAMILY WRKY DNA-binding domain 281 342 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan4g1747 351 MobiDBLite consensus disorder prediction 223 246 - -
Lan4g1747 351 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1747 Lan-Chr4 26126081 26128725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1747 1 348 WRKY Transcription Factor Family AT2G30590 56.995 4.44e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan4g1747 WRKY 4.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1747 - - gmx:100170681 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1747 4 26126081 26128725 Lan4g1747 4 26126081 26128725 ECH
Lan8g0705 8 9152392 9155166 Lan4g1747 4 26126081 26128725 LSH
Lan20g0164 20 1065770 1068350 Lan4g1747 4 26126081 26128725 LSH