Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1740 ATGGAAGTAGTAGGCTTGAAGAAGATGGTGTTTGAGGAAACTGAGCTGAGGCTGGGACTACCTGGAAATGGATCAGCCAACACATCTATTGAAGGAGAAGTTGTGAGGAAGAGAAGCTTCTGTGAAACTGAGAAAACCACCATTGATTTGATGCTTAACCTTTCTTCAAAGGAACCAACTTCAGATCCAAGTGATAAGATCAACAACACTACTTCTTCGTCTAAGGAGAGGGCTCTGCTTCTGCCTTCTGATCATGCCAAGCCTCCTGCTAAGGCGCAAGTGGTGGGTTGGCCACCGGTGCGGTCGTACCGGAAAAACATGTTGGCAGTGCAAAAAAGCGGCGGAGAAGAGAGCAGCCCTAACAATAATGTAAGCTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAACAGTTATCCTCAGCTCTCTGATGCCTTAGGCAAAATGTTTAGTTCCTTCACCATTGGAAATTGTGAATCCCAAGGCATGAAGGATTTTATGAATGAGAGTAAGCTGATGGATCTTTTAAACAGCTCCGATTATGTCCCAACCTATGAAGACAAAGATGGCGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCAATTGGACTAGCACCAAGAGCCATGGAGAAATACAAGAATAGGAGCTACTAG 732 0.4495 MEVVGLKKMVFEETELRLGLPGNGSANTSIEGEVVRKRSFCETEKTTIDLMLNLSSKEPTSDPSDKINNTTSSSKERALLLPSDHAKPPAKAQVVGWPPVRSYRKNMLAVQKSGGEESSPNNNVSFVKVSMDGAPYLRKVDLKMYNSYPQLSDALGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKYKNRSY* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1740 243 Gene3D - 119 236 - -
Lan4g1740 243 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 235 IPR003311 GO:0005634|GO:0006355
Lan4g1740 243 Pfam AUX/IAA family 13 233 IPR033389 -
Lan4g1740 243 PANTHER AUXIN-INDUCED PROTEIN AUX28 6 235 - -
Lan4g1740 243 SUPERFAMILY CAD & PB1 domains 118 223 - -
Lan4g1740 243 ProSiteProfiles PB1 domain profile. 124 224 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1740 Lan-Chr4 26078686 26083979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1740 113 243 B3 DNA Binding Superfamily AT3G61830 28.986 4.71e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan4g1740 AUX_IAA 5.6e-85 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1740 4 26078686 26083979 Lan4g0491 4 7438138 7441121 ECH
Lan4g1740 4 26078686 26083979 Lan4g1740 4 26078686 26083979 ECH